View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3025_low_21 (Length: 313)
Name: NF3025_low_21
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 5548843 - 5549020
Alignment:
| Q |
10 |
gcagagacaacgtacgacaattcaaatagccaatgagagtgttctcaaattttggcttgttccatgtaatgggaaacgtaacactattgttgttactgct |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5548843 |
gcagagacaacgtacgacaattcaaatagccaatgagagtgttctcaaattttggcttgttccatgtaatgggaaacgtaacactattgttgtcactgct |
5548942 |
T |
|
| Q |
110 |
gttatagcagaagttgaaatggacggttgtgatgttgtcacattttttagatggaaaagacttatgaaaaatataata |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5548943 |
gttatagcagaagttgaaatggacggttgtgatgttgtcacattttttagatggaaaagacttatgaaaaatataata |
5549020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 5549085 - 5549146
Alignment:
| Q |
252 |
tgtaacattgaatatttgagtcttatgtgtggttcatcgaggtggatatttcaatgagacct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
5549085 |
tgtaacattgaatatttgagtcttatgtggggttcatcgaggtggttatttcaatgagacct |
5549146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University