View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_low_23 (Length: 310)

Name: NF3025_low_23
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_low_23
NF3025_low_23
[»] chr5 (3 HSPs)
chr5 (1-219)||(32313494-32313712)
chr5 (254-296)||(32313713-32313755)
chr5 (8-56)||(32310508-32310556)
[»] chr4 (3 HSPs)
chr4 (253-287)||(14314721-14314755)
chr4 (153-210)||(7111209-7111266)
chr4 (142-210)||(53937729-53937797)
[»] chr3 (1 HSPs)
chr3 (159-212)||(34557326-34557379)
[»] chr1 (1 HSPs)
chr1 (149-189)||(36865867-36865907)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32313494 - 32313712
Alignment:
Q  1 ttataaattaatgatattttaagctcttaacaatgtcacttcatcaaaagagtcacttgaaacatgatacatgannnnnnnnnnnng-taaaataggagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  || |            | ||||||||||||    
T  32313494 ttataaattaatgatattttaagctcttaacaatgtcacttcatcaaaagagtcacttcaaacaaagtttattaaagtttatacatgataaaataggagg 32313593  T
Q  100 aactacaattgataacggttaatttggaggaatcaaagtttattaaagtaaatttttagagagaataaaaacgaaagttgctatatttagaatgacaaaa 199  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |||    
T  32313594 aactataattgacaacggttaatttggaggaatcaaagtttattaaagtaaatttttagagggaat-aaaaggaaagttgctatatttagaatgacgaaa 32313692  T
Q  200 aacatatttaaatagaatat 219  Q
    ||||||||||||||||||||    
T  32313693 aacatatttaaatagaatat 32313712  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 32313713 - 32313755
Alignment:
Q  254 tgtgtttgatttgctaaacaataagtactcgacataaaagtat 296  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  32313713 tgtgtttgatttgctaaacaataagtacttgacataaaagtat 32313755  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 32310556 - 32310508
Alignment:
Q  8 ttaatgatattttaagctcttaacaatgtcacttcatcaaaagagtcac 56  Q
    |||||||||||||||||| |||| || | ||||||||| ||||||||||    
T  32310556 ttaatgatattttaagcttttaataaggacacttcatccaaagagtcac 32310508  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 14314721 - 14314755
Alignment:
Q  253 gtgtgtttgatttgctaaacaataagtactcgaca 287  Q
    |||||||||||||||||||||||||||||| ||||    
T  14314721 gtgtgtttgatttgctaaacaataagtactggaca 14314755  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 7111266 - 7111209
Alignment:
Q  153 ttttagagagaataaaaacgaaagttgctatatttagaatgacaaaaaacatatttaa 210  Q
    ||||||||||| |||||   ||||||| |||||||| || ||||||||||||||||||    
T  7111266 ttttagagagactaaaacgaaaagttggtatatttataaggacaaaaaacatatttaa 7111209  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 53937729 - 53937797
Alignment:
Q  142 ttaaagtaaatttttagagagaataaaaacgaaagttgctatatttagaatgacaaaaaacatatttaa 210  Q
    |||||| ||| |||||||| || |||||   ||||||| |||||||| || ||||||||||||||||||    
T  53937729 ttaaaggaaaattttagagggactaaaataaaaagttggtatatttataaggacaaaaaacatatttaa 53937797  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 34557326 - 34557379
Alignment:
Q  159 agagaataaaaacgaaagttgctatatttagaatgacaaaaaacatatttaaat 212  Q
    ||||| ||||||  ||||||| |||||||| || ||||||||||||||||||||    
T  34557326 agagactaaaaataaaagttgttatatttaaaaagacaaaaaacatatttaaat 34557379  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 36865867 - 36865907
Alignment:
Q  149 aaatttttagagagaataaaaacgaaagttgctatatttag 189  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  36865867 aaatttttagagagattaaaaatgaaagttgatatatttag 36865907  T

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