View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_24 (Length: 301)
Name: NF3025_low_24
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 42577426 - 42577516
Alignment:
| Q |
13 |
aatatcatgctgggtggttaaagagaaatatagggtgaatacacgacacctgacttgtgtctaaagtaaataaaacctcgtggctcaaaca |
103 |
Q |
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| T |
42577426 |
aatatcatgctgggtggttaaagagaaatatagggtgaatgcacgacacctgacttgtgtctaaagtaaataaaacctcgtggctcaaaca |
42577516 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 42577505 - 42577582
Alignment:
| Q |
176 |
gtggctctaacacaaaaacgtgtctaattcaagtatcattgggctttacaaatactaatcattaacattgtgtttggt |
253 |
Q |
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| T |
42577505 |
gtggctcaaacacaaaaacgtgtctaattcaagtatcattgggctttacaaatacgaatccttaacaatgtgtttggt |
42577582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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