View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_25 (Length: 295)
Name: NF3025_low_25
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 52003353 - 52003601
Alignment:
| Q |
30 |
agaacctgtggtggtgttgaagattcatcaagtaaggaaccatagatttcattgaaagtgttactgtagtgatcattgttgttatagctttgaggaactt |
129 |
Q |
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| T |
52003353 |
agaatctgtggtggtgttgaagattcatcaagtaaggaaccatagatttcattgaaagtgttactgtagtgatcattgttgttatagctttgaggaactt |
52003452 |
T |
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| Q |
130 |
gttgagtacaagaagagtttggtagatatggtaaagagttttgatcaaaacagttatcaaaactcaagttacttgttgatgagaagaattgattttcttc |
229 |
Q |
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| T |
52003453 |
gttgagtacaagaagagtttggtagatatggtaaagagttttgttcaaaacagttatcaaaactcaagttacttgttgatgagaagaattgattttcttc |
52003552 |
T |
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| Q |
230 |
ttgacttggattggtaatttcatatgtttctcttcttagagccattaat |
278 |
Q |
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| T |
52003553 |
ttgacttggattggtaatttcatatgtttctcttcttagagccattaat |
52003601 |
T |
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