View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3025_low_28 (Length: 270)
Name: NF3025_low_28
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 5549539 - 5549283
Alignment:
| Q |
1 |
ttgaagattattaaccnnnnnnncttgtctctgttgatggtcaaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttnnnnnnnn |
100 |
Q |
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| T |
5549539 |
ttgaagattattaaccaaaaaaacttgtctctgttgatggtcaaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttaaaaagaa |
5549440 |
T |
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| Q |
101 |
nnnnnntccaatgatctcattcttcagtcatcatgtcaaaatctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5549439 |
aaaaaatccaatgatctcattcttcagtcatcatgtcaaaatctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaatatc |
5549340 |
T |
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| Q |
201 |
tacaaaattattaaatattaagaaacccttttattaatttctacaaatgatgttctt |
257 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5549339 |
tacaaaattataaaatattaagaaacccttttattaatttctacacatgatgttctt |
5549283 |
T |
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