View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_low_29 (Length: 254)

Name: NF3025_low_29
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_low_29
NF3025_low_29
[»] chr4 (2 HSPs)
chr4 (1-203)||(7108724-7108922)
chr4 (116-195)||(53062677-53062755)
[»] chr5 (2 HSPs)
chr5 (4-203)||(33657236-33657441)
chr5 (1-164)||(234040-234210)
[»] chr2 (1 HSPs)
chr2 (1-203)||(42577632-42577834)
[»] chr1 (2 HSPs)
chr1 (127-196)||(45708554-45708624)
chr1 (140-203)||(7384322-7384385)
[»] chr3 (1 HSPs)
chr3 (118-163)||(44247137-44247182)
[»] chr8 (1 HSPs)
chr8 (126-195)||(2080069-2080138)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7108724 - 7108922
Alignment:
Q  1 caaggggatacaatctttaaattttctgcaatttttgaggagtttgaaacaa-gaagaagataagggcaaatatggaattttcaaaaatatatccatttc 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  7108724 caagcggatacaatctttaaattttctgcaatttttgaggagtttgaaacaacgaagaagataagggcaaatatggaattttgaaaaatatacccatttc 7108823  T
Q  100 tcagctctttcttcctgaagagaaataaaaaacatgtgggtcccacatgttttaactctctcccccctatttctctagctttcaaacaagagaaataacc 199  Q
    | |||||||||||| |     ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||| |    
T  7108824 ttagctctttcttcgt----tgaaataaaaaacatgtgggtcccacgtgttttaactctct-ccccctatttctctggcttccaaacaagagaaataatc 7108918  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 53062677 - 53062755
Alignment:
Q  116 gaagagaaataaaaaacatgtgggtcccacatgttttaactctctcccccctatttctctagctttcaaacaagagaaat 195  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||| | | | || ||||||||||||||    
T  53062677 gaagagaaataaaa-acatgtgggtcccatgtgttttaactctctctcccctatttttttggtttccaaacaagagaaat 53062755  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 33657236 - 33657441
Alignment:
Q  4 ggggatacaatctttaaattttctgcaatttttgaggagtttgaaacaag-aagaagataagggcaaatatggaattttcaaaaatatatccatttctca 102  Q
    |||||| ||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  33657236 ggggatgcaatctt-aaattttatgcaatttttgagaagtttgaaacaaggaagaagataagggcaaatatggaattttgaaaaatatacccatttctca 33657334  T
Q  103 gctctttcttcc------tgaagagaaataaaaaacatgtgggtcccacatgttttaactctctcccccctatttctctagctttcaaacaagagaaata 196  Q
     || |||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33657335 actatttcttcgctcctgtgaagagaaataaaaaacatgtgggtcccacgtgttttaactctctcccccctatttctttagctttcaaacaagagaaata 33657434  T
Q  197 accaact 203  Q
    |||||||    
T  33657435 accaact 33657441  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 234040 - 234210
Alignment:
Q  1 caaggggatacaatctttaaattttctgcaatttttgaggagtttgaaacaa-gaagaagataagggcaaatatggaattttcaaaaatatatccatttc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  234040 caaggggatacaatctttaaattttctgcaatttttgaggagtttgaaacaaggaagaagataagggcaaatatcgaattttgaaaaatatacccatttc 234139  T
Q  100 tcagctctttcttc------ctgaagagaaataaaaaacatgtgggtcccacatgttttaactctctcccc 164  Q
    ||||||||||||||       ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  234140 tcagctctttcttcgctcttatgaagagaaataaaaaatatgtgggtcccacgtgttttaactctctcccc 234210  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 42577834 - 42577632
Alignment:
Q  1 caaggggatacaatctttaaattttctgcaatttttgaggagtttgaaacaa-gaagaagataagggcaaatatggaattttcaaaaatatatccatttc 99  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  42577834 caaggggatacattctttaaattttctgcaattttttaggagtttgaaacaaggaagaagataagggcaaatgtggaattttgaaaaatatacccatttc 42577735  T
Q  100 tcagctctttcttcctgaagagaaat-aaaaaacatgtgggtcccacatgttttaact----------ctctcccccctatttctctagctttcaaacaa 188  Q
    ||||||            |||||||| |||||||||||||||||||||||||||||||          | | |||||||||||||||||||| |||||||    
T  42577734 tcagct------------agagaaataaaaaaacatgtgggtcccacatgttttaactcccccccccccccccccccctatttctctagcttccaaacaa 42577647  T
Q  189 gagaaataaccaact 203  Q
    |||||||||||||||    
T  42577646 gagaaataaccaact 42577632  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 45708554 - 45708624
Alignment:
Q  127 aaaaacatgtgggtcccacatgttttaactctctcccccctatttctctag-ctttcaaacaagagaaata 196  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||| | | || ||||||||||||||||    
T  45708554 aaaaacatgtgtgtcccacatgttttaactctctctcctctatttctttggtctgtcaaacaagagaaata 45708624  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 7384322 - 7384385
Alignment:
Q  140 tcccacatgttttaactctctcccccctatttctctagcttt-caaacaagagaaataaccaact 203  Q
    ||||||| |||||||||||||| ||| ||||||| ||| ||| |||||||||||||| |||||||    
T  7384322 tcccacaagttttaactctctctcccttatttct-taggtttccaaacaagagaaatgaccaact 7384385  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 44247182 - 44247137
Alignment:
Q  118 agagaaataaaaaacatgtgggtcccacatgttttaactctctccc 163  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||    
T  44247182 agagaaataaaaaatatgtgggtcccacatgtttcaattctctccc 44247137  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 2080069 - 2080138
Alignment:
Q  126 aaaaaacatgtgggtcccacatgttttaactctctcccccctatttctctagctttcaaacaagagaaat 195  Q
    |||||| |||||| | |||||||||||||||||| | ||||||||||| |   || ||||||||||||||    
T  2080069 aaaaaaaatgtggataccacatgttttaactctcactcccctatttctttgatttccaaacaagagaaat 2080138  T

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