View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3025_low_30 (Length: 254)
Name: NF3025_low_30
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 5178336 - 5178208
Alignment:
| Q |
44 |
aaattgtacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcc |
143 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178336 |
aaattgtacaaggtctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcc |
5178237 |
T |
|
| Q |
144 |
tctcaatctgatgatgggaaattttgatt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5178236 |
tctcaatctgatgatgggaaattttgatt |
5178208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 5175000 - 5174921
Alignment:
| Q |
175 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaaga |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5175000 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaaga |
5174921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 52008525 - 52008403
Alignment:
| Q |
50 |
tacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaa |
149 |
Q |
| |
|
|||||| |||||||||||||| | ||| || |||| ||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||| || |
|
|
| T |
52008525 |
tacaagatctttacttagaagagaatgattttttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaa |
52008426 |
T |
|
| Q |
150 |
tctgatgatgggaaattttgatt |
172 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
52008425 |
tttgatgatgggaaattttgatt |
52008403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 52002800 - 52002737
Alignment:
| Q |
175 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgta |
238 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52002800 |
cgttaaacaaaaaagtaacataataagattaatcaaggtattttatttgccaataatatttgta |
52002737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University