View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3025_low_6 (Length: 499)
Name: NF3025_low_6
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3025_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 37 - 487
Target Start/End: Original strand, 39085528 - 39085976
Alignment:
| Q |
37 |
atttaaatttgtccatagttcaatcactaaagtcacgtgcagaagataccattgatttagttataacgattaatctctaaaattatgtgcaaaagatacc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085528 |
atttaaatttgtccatagttcaatcactaaagtcacgtgcagaagataccattgatttagttataacgattaatctctaaaattatgtgcaaaagatacc |
39085627 |
T |
|
| Q |
137 |
tttggttaaaataaaataaaaagtttgactctacatttcagaaccctccaatccatgcctccatttggatagattaaacaaataccaagaaatgtatata |
236 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39085628 |
tttggttaaaaaaaaa--agaagtttgactctacatttcagaaccctccaatccatgcctccatttggatagatgaaacaaataccaagaaatgtatata |
39085725 |
T |
|
| Q |
237 |
aaaatgaattggtgttaatggttattgcaacttttcttcacgttttaaatacatacgcactaaaaagtacnnnnnnnttacaaagccattcaatcaattt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39085726 |
aaaatgaattggtgttaatggttattgcaacttttcttcacgttttaaatacatacgcactaaaaagtacaaaaaaattacaaagccattcaatcaattt |
39085825 |
T |
|
| Q |
337 |
tcaccatttaaatacatattgttttctaaaacacacgtacatatatgtaatctgtagcatttaattagacatgtaatatcaaaaacatacatatcaaatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085826 |
tcaccatttaaatacatattgttttctaaaacacacgtacatatatgtaatctgtagcatttaattagacatgtaatatcaaaaacatacatatcaaatg |
39085925 |
T |
|
| Q |
437 |
atatatctgcagcctgcacattgcacaatgttacggtttatccagcacagg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085926 |
ctatatctgcagcctgcacattgcacaatgttacggtttatccagcacagg |
39085976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 31728438 - 31728517
Alignment:
| Q |
69 |
tcacgtgcagaagataccattgatttagttataac-----gattaatctctaaaattatgtgcaaaagatacctttggtt |
143 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31728438 |
tcacatgcaaaaaataccattgatttagttataacttaaagattaatctctaaaattatgtgcaaaagatacatttggtt |
31728517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University