View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3025_low_7 (Length: 494)

Name: NF3025_low_7
Description: NF3025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3025_low_7
NF3025_low_7
[»] chr5 (2 HSPs)
chr5 (344-476)||(16183791-16183924)
chr5 (49-86)||(42474478-42474515)
[»] chr2 (2 HSPs)
chr2 (322-434)||(25642917-25643030)
chr2 (321-420)||(7718904-7719004)
[»] chr1 (2 HSPs)
chr1 (304-389)||(29114558-29114644)
chr1 (332-394)||(36353257-36353319)
[»] chr3 (3 HSPs)
chr3 (211-268)||(48050925-48050982)
chr3 (209-332)||(33508725-33508850)
chr3 (263-418)||(34365831-34365988)
[»] chr4 (4 HSPs)
chr4 (217-268)||(39957340-39957391)
chr4 (280-377)||(29540192-29540290)
chr4 (304-378)||(35849976-35850050)
chr4 (212-420)||(9277214-9277423)
[»] chr7 (3 HSPs)
chr7 (304-394)||(2786116-2786206)
chr7 (344-394)||(28592069-28592119)
chr7 (353-433)||(3127235-3127316)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 16183924 - 16183791
Alignment:
Q  344 ataattgtatctagatcaatatattctattatatctttctcgatatataaatg-actagaccatttaacttttcttgtagcactgacgatcacgagttgt 442  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||| | |||||||||||| ||||||||    
T  16183924 ataaatgtatctagatcaatatattctatcatatcttcctcgatatataaaaggactagaccatttaacttttcttatggcactgacgatctcgagttgt 16183825  T
Q  443 tattgaatattagtgatatgctcaacattatttt 476  Q
    ||||||||||||||||||||||||||||||||||    
T  16183824 tattgaatattagtgatatgctcaacattatttt 16183791  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 42474478 - 42474515
Alignment:
Q  49 acttatgacgttgtggttgatcaatgtctcatgacatt 86  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  42474478 acttatgacgttgtggttggtcaatgtcacatgacatt 42474515  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 25642917 - 25643030
Alignment:
Q  322 atttttagatataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatatat-aaatgactagaccatttaacttttcttgt 420  Q
    |||| |||||||||||||||| |||||||| |||| |||||||| ||||||  ||| | | || ||| || |||||||||||||||| ||| ||||||||    
T  25642917 atttctagatataaagtcattaataattgtgtctacatcaatatgttctatcgtatttgtttcaatacataaaatgactagaccattcaacctttcttgt 25643016  T
Q  421 agcactgacgatca 434  Q
      ||||| ||||||    
T  25643017 gacactgccgatca 25643030  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 420
Target Start/End: Complemental strand, 7719004 - 7718904
Alignment:
Q  321 catttttagatataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatata-taaatgactagaccatttaacttttcttg 419  Q
    |||||||||||  ||||||||| ||||||||  ||| |||||||| || |||  |||||||||| ||| |  ||||| |||||||||| ||| |||||||    
T  7719004 catttttagatgcaaagtcattaataattgtgcctacatcaatatgttttatcttatctttctcaatacacaaaatggctagaccattcaacctttcttg 7718905  T
Q  420 t 420  Q
    |    
T  7718904 t 7718904  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 29114644 - 29114558
Alignment:
Q  304 aaaacaattcctacaaacatttttagatataaagtcatt-tataattgtatctagatcaatatattctattatatctttctcgatat 389  Q
    ||||||||| |||||  ||||| |||||| ||||||| | ||||||||| || | ||||||||||||||| ||||||||||| ||||    
T  29114644 aaaacaatttctacatgcatttatagataaaaagtcactatataattgtgtcaacatcaatatattctatcatatctttctcaatat 29114558  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 36353319 - 36353257
Alignment:
Q  332 ataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatatataaa 394  Q
    ||||||||| | |||||| | |||| ||||||||||||||  ||||||||||| |||||||||    
T  36353319 ataaagtcactaataattatgtctacatcaatatattctagcatatctttctcaatatataaa 36353257  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 48050982 - 48050925
Alignment:
Q  211 gatagtttttattacattaaaaaatgatctaatagaaacatcatatttcatacaaaaa 268  Q
    ||||||||||| ||||||||||||| ||||| || |||||||| | ||||||||||||    
T  48050982 gatagtttttactacattaaaaaattatctagtaaaaacatcaaaattcatacaaaaa 48050925  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 33508725 - 33508850
Alignment:
Q  209 atgatagtttttattacattaaaaaatgatctaatagaaacatcatatttcatacaaaaat-attaaattatttatttaatggtcaaatgctcata-aaa 306  Q
    ||||||||||||| | | |||| ||||  ||||| | |||||||| |||||||| |||||  ||| | || ||||||||||  |||||| ||| || |||    
T  33508725 atgatagtttttactgcgttaagaaattctctaacaaaaacatcaaatttcatataaaaaacattgagttttttatttaatattcaaatactcgtacaaa 33508824  T
Q  307 acaattcctacaaacatttttagata 332  Q
    ||||||||||||| ||||| ||||||    
T  33508825 acaattcctacaagcatttctagata 33508850  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 418
Target Start/End: Complemental strand, 34365988 - 34365831
Alignment:
Q  263 caaaaatattaaattatttatttaatggtcaaatgctcata-aaaacaattcctacaaacatttttagatataaagtcatttataattgtatctagatca 361  Q
    |||||||||| |||| |||||||| |  ||||| | || || |||| ||||| ||| | ||||| |||||| ||||||| | |||||||| ||||  ||     
T  34365988 caaaaatattgaattttttatttagtattcaaacgatcctacaaaataattcatacgatcatttatagatacaaagtcactaataattgtgtctacgtcg 34365889  T
Q  362 atatattctattatatctttctcgatat-ataaatgactagaccatttaacttttctt 418  Q
    ||||||||||| ||||| || || |||| | ||||| ||||| |||| ||||||||||    
T  34365888 atatattctatcatatccttttcaatataaaaaatggctagatcattcaacttttctt 34365831  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 39957391 - 39957340
Alignment:
Q  217 ttttattacattaaaaaatgatctaatagaaacatcatatttcatacaaaaa 268  Q
    ||||||| | |||||||||||||||||| || ||||| ||||||||||||||    
T  39957391 ttttattgcgttaaaaaatgatctaataaaatcatcagatttcatacaaaaa 39957340  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 29540192 - 29540290
Alignment:
Q  280 ttatttaatggtcaaatgctcata-aaaacaattcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatat 377  Q
    |||||||||  | |||| |||||| |||| ||||| |||||  |||| |||||  ||||||||| |||||||| |||| ||||||||||||||| ||||    
T  29540192 ttatttaatatttaaatactcatacaaaataattcatacaagtatttctagatgcaaagtcattaataattgtgtctacatcaatatattctatcatat 29540290  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 35849976 - 35850050
Alignment:
Q  304 aaaacaattcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatatc 378  Q
    |||| ||||| |||||||||||||||||  ||||||||| |||||||| |||| | || ||| |||||| |||||    
T  35849976 aaaataattcatacaaacatttttagatgcaaagtcattaataattgtgtctacagcattatgttctatcatatc 35850050  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 420
Target Start/End: Complemental strand, 9277423 - 9277214
Alignment:
Q  212 atagtttttattacattaaaaaatgatctaa-tagaaacatcatatttcatacaaaaa-tattaaattatttatttaatggtcaaatgctcataaaaaca 309  Q
    |||||||||||||| | ||||||| || ||| || ||| |||| |||| ||||||||| |||| |||| | ||||||||  |||||||||| || |||      
T  9277423 atagtttttattacgtaaaaaaattatataaataaaaatatcagattttatacaaaaaatattgaattttctatttaatattcaaatgctcgtacaaa-- 9277326  T
Q  310 attcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatatat-aaatgactagaccattt 408  Q
    ||| |||| | |||||||| ||  ||| ||| | |||||||| | || || ||||| |||||| |||||||||||  || || ||||| |||||| |||     
T  9277325 atttctacgagcatttttatatgcaaattcactaataattgtgtttacattaatattttctatcatatctttctcagtacatgaaatggctagacgattc 9277226  T
Q  409 aacttttcttgt 420  Q
    || |||||||||    
T  9277225 aagttttcttgt 9277214  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 2786206 - 2786116
Alignment:
Q  304 aaaacaattcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatatataaa 394  Q
    |||||||||| |||||| |||||||||| |||||| | | |||||| | |||| |||||||  || ||| || |||||||||||| |||||    
T  2786206 aaaacaattcttacaaagatttttagatgtaaagttactaataattatctctacatcaataagttatatcatgtctttctcgatacataaa 2786116  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 28592069 - 28592119
Alignment:
Q  344 ataattgtatctagatcaatatattctattatatctttctcgatatataaa 394  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||| |||||    
T  28592069 ataattgtgtctatatcaatatattctatgatatctttctcaatacataaa 28592119  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 3127316 - 3127235
Alignment:
Q  353 tctagatcaatatattctattatatctttctcgatatat-aaatgactagaccatttaacttttcttgtagcactgacgatc 433  Q
    |||| |||||||| |||||| ||||||||||| ||| || ||||| ||||| |||||||| ||||||||  || ||||||||    
T  3127316 tctacatcaatatgttctatcatatctttctcaatacataaaatggctagagcatttaacatttcttgtgacattgacgatc 3127235  T

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