View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3028_high_1 (Length: 668)
Name: NF3028_high_1
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 35544602 - 35544877
Alignment:
| Q |
20 |
cacagttcaaagcagccatcaacctagctcagcaacaatggctgtgcctcttctaaccaagaagatcgtgaaaaagagggtcaaacatttcaagagaccc |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35544602 |
cacagttcacagcagccatcaacctagctcagcaacaatggctgtgcctcttctaaccaagaagatcgtgaagaagagggtcaaacatttcaagagaccc |
35544701 |
T |
|
| Q |
120 |
caaagtgatcgtaagatctgtgtaaaggtataataatagcttttatctttttcaattctgtttatcaattaggatgtgatgatagtaattgtcgccccag |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35544702 |
caaagtgatcgcaagatctgtgtaaaggtataataatagcttttaactttttcaattctgcttatcaattcggatgtgatgatagtaattgtcgccccag |
35544801 |
T |
|
| Q |
220 |
tcttaatttgcaccaatggtgtaatatggtgactgacactttatctgatcctgatttatttactatgtctcttaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35544802 |
tcttaatttgcaccaatggtgtaatatggtgactgacactttatctgatcctgatttatttactatgtctcctaaa |
35544877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 505 - 658
Target Start/End: Original strand, 35545055 - 35545208
Alignment:
| Q |
505 |
tattatggtatagtttgcaagagaaatgatgatatatatccatacggttctgttatagatgatgaaacaaacatgcactaccatctgatcttttgcaaat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35545055 |
tattatggtatagtttgcaagagaaatgatgatatatatccatacggttctgttatagatgatgaaacaaacatgcactaccatctgatctcttgcaaat |
35545154 |
T |
|
| Q |
605 |
tagttttaaactttgttgaatttttgttgttttaaatagtgtatattgcctatg |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35545155 |
tagttttaaactttgttgaatttttgttgttttaaatagtgtatattgcctatg |
35545208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 35544904 - 35545013
Alignment:
| Q |
336 |
caatattgatgcttgatgggatatgaggatnnnnnnnttcaaatgtgacatccagtcttactacatacgtggtgattgatcgactatctgatcccttata |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35544904 |
caatattgatgcttgatgggatatgaggataaaaaaattcaaatgtgacatccagtcttactacatacgtggtgattgatcgactatctgatccctaata |
35545003 |
T |
|
| Q |
436 |
caaatctcaa |
445 |
Q |
| |
|
||||| |||| |
|
|
| T |
35545004 |
caaatatcaa |
35545013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 45 - 261
Target Start/End: Complemental strand, 11412591 - 11412370
Alignment:
| Q |
45 |
agctcagcaacaatggctgtgcctcttctaaccaagaagatcgtgaaaaagagggtcaaacatttcaagagaccccaaagtgatcgtaagatctgtgtaa |
144 |
Q |
| |
|
|||||| ||||||||| |||||| ||||| |||||||||||| | || |||||||||||||||||||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
11412591 |
agctcatcaacaatggatgtgccacttctcaccaagaagatcataaagaagagggtcaaacatttcaaaagaccccaaagcgatcgcaagatctgtgtga |
11412492 |
T |
|
| Q |
145 |
aggtataataatagcttttatctttttcaattctgtttatcaatta--------ggatgtgatgatagtaattgtcgccccagtcttaatttgcaccaat |
236 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11412491 |
aggtat---aatagcttttcactttttcaattctgttcattgattatattctttggatgtgatgatagtaattgtcgccccagtcttaatttgcacctaa |
11412395 |
T |
|
| Q |
237 |
ggtgtaatatggtgactgacacttt |
261 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11412394 |
ggtgtaatatggtgactgacacttt |
11412370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 39036251 - 39036175
Alignment:
| Q |
519 |
ttgcaagagaaatgatgatatatatccatacggttctgttatagatgatgaaacaaacatgcactaccatctgatct |
595 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
39036251 |
ttgcaagagaaatgatgatatttatccatacggttctgtttttcatgatgaaacaaacatgcactaccatctgatct |
39036175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 16936832 - 16936781
Alignment:
| Q |
551 |
gttctgttatagatgatgaaacaaacatgcactaccatctgatcttttgcaa |
602 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16936832 |
gttctgttattgatgatgaaacaaacatgcactaccatctgatctcttgcaa |
16936781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 16935615 - 16935573
Alignment:
| Q |
190 |
aggatgtgatgatagtaattgtcgccccagtcttaatttgcac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16935615 |
aggatgtgatgatagtaattgtcgccccagtcttaatttgcac |
16935573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 16936424 - 16936338
Alignment:
| Q |
190 |
aggatgtgatgatagtaattgtcgccccagtcttaatttgcac-----caatggtgtaatatggtgactgacactttatctgatcct |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
16936424 |
aggatgtgatgatagtaattgtcgccccagtcttaattggcactataataatagtgtaacatggtgactgacatcttatctgatcct |
16936338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University