View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_high_10 (Length: 317)
Name: NF3028_high_10
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 3680706 - 3680521
Alignment:
| Q |
5 |
tagatttgacagaattgcttttaaaaaaa-tataacataatggaaaagttattaacacnnnnnnnnntggaaaagttataatatattttttaaaatagta |
103 |
Q |
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| T |
3680706 |
tagatttgacagaattgcttttaaaaaaaatataacataatggaaaagttattaacacaaaaaaaaatggaaaagttataatatattttttaaaatagta |
3680607 |
T |
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| Q |
104 |
agttataatcnnnnnnncacttacacctttttt-ggaatattgagaaacaaaatacattttgtataaatctatactttttcaaacc |
188 |
Q |
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| T |
3680606 |
agttataatctttttttcacttacacctttttttggaatattgagaaacaaaatacattttgtataaatctatactttttcaaacc |
3680521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 3678802 - 3678705
Alignment:
| Q |
200 |
ttaaacatttaacaagataaactcacctttatttcatgatcaattaaaaaagcaatacaagcaggtatgaaatcataaaaatgagattaagcatcttg |
297 |
Q |
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| T |
3678802 |
ttaaacatttaacaagataaactcacctttatttcatgatcaattaaaaaagcaatacaaggaggtataaaatcataaaaatgagattaagcatcttg |
3678705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 40792508 - 40792572
Alignment:
| Q |
122 |
acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaatctatactttttcaa |
185 |
Q |
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| T |
40792508 |
acttacacctttttttggaatattgataaacaaaatacattttgtataaatctatgcattttcaa |
40792572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 2071870 - 2071920
Alignment:
| Q |
122 |
acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaat |
171 |
Q |
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| T |
2071870 |
acttacacctttttttggaatattgaaaaacaaaatatattttgtataaat |
2071920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 961663 - 961702
Alignment:
| Q |
131 |
ttttttggaatattgagaaacaaaatacattttgtataaa |
170 |
Q |
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| T |
961663 |
ttttttggaatattgacaaataaaatacattttgtataaa |
961702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 2071811 - 2071853
Alignment:
| Q |
71 |
tggaaaagttataatatattttttaaaatagtaagttataatc |
113 |
Q |
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| T |
2071811 |
tggaaaagttataatatattttaaaaaataataagttataatc |
2071853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 44679544 - 44679588
Alignment:
| Q |
131 |
ttttttggaatattgagaaacaaaatacattttgtataaatctat |
175 |
Q |
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| T |
44679544 |
ttttttggaatattgagaaacaaaatacattttgtataaatctat |
44679588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 14651405 - 14651469
Alignment:
| Q |
122 |
acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaatctatactttttcaa |
185 |
Q |
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| T |
14651405 |
acttacacctttttttggaatattgataaacaaaatacattttgtataaatctatgcattttcaa |
14651469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 46581471 - 46581512
Alignment:
| Q |
131 |
ttttttggaatattgagaaacaaaatacattttgtataaatc |
172 |
Q |
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| T |
46581471 |
ttttttggaatattgacaaataaaatacattttgtataaatc |
46581512 |
T |
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