View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_high_12 (Length: 246)
Name: NF3028_high_12
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 47946609 - 47946399
Alignment:
| Q |
23 |
ggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataaacgttccttttgatctaaagga |
122 |
Q |
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| T |
47946609 |
ggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataaacgttccttttgatctaaag-a |
47946511 |
T |
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| Q |
123 |
aaataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacc |
222 |
Q |
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| T |
47946510 |
aaataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacc |
47946411 |
T |
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| Q |
223 |
ttcttcctgttc |
234 |
Q |
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|||||||||||| |
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| T |
47946410 |
ttcttcctgttc |
47946399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 47952039 - 47951829
Alignment:
| Q |
23 |
ggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataaacgttccttttgatctaaagga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47952039 |
ggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataaacgttccttttgatctaaag-a |
47951941 |
T |
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| Q |
123 |
aaataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacc |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47951940 |
aaataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacc |
47951841 |
T |
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| Q |
223 |
ttcttcctgttc |
234 |
Q |
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|||||||||||| |
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| T |
47951840 |
ttcttcctgttc |
47951829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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