View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_high_9 (Length: 331)
Name: NF3028_high_9
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 24646049 - 24646360
Alignment:
| Q |
1 |
caaccatcacatattagtctgctccaccaaagcatggtcaattgacacatgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatg |
100 |
Q |
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| T |
24646049 |
caaccatcacatattagtctgctccaccaaagcatggtcaattgacacatgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatg |
24646148 |
T |
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| Q |
101 |
acaacctaacttattcaagtggctttgaaacttaaaatttgcaaattgtgttcttgcataggaaggggatatattaaacatggatcatctgtgatcaact |
200 |
Q |
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| T |
24646149 |
acaacctaactcattcaagtggctttgaaacttaaaatttgcaaattgtgttcttgcataggaaggggatatattaaacatggatcatctgtgatcaact |
24646248 |
T |
|
| Q |
201 |
tcatcgtcttcccaataaattcccaaactataagactagcaacaaaaaatcacaatgatcataaattagtaattgtttgagaatcttgcagtggatgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24646249 |
tcatcgtcttcccaataaattcccaaactataagactagcaacaaaaaatcacaatgatcataaattagtaattgtttgagaatcttgcagtggatgtga |
24646348 |
T |
|
| Q |
301 |
tctggtatatac |
312 |
Q |
| |
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|||||||||||| |
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| T |
24646349 |
tctggtatatac |
24646360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 24633196 - 24633322
Alignment:
| Q |
5 |
catcacatattagtctgctccaccaaagcatggtcaattgacacatgctttgtagaaaggatgcgtttcaaaaaacagtttaaatgaacactaatgacaa |
104 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
24633196 |
catcacatattattctgctccaccaaagtatggccaattgacatatgcttagtagaaaggatgtgtttcaaaaaacagtttaaatgaacacaaatgacaa |
24633295 |
T |
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| Q |
105 |
cctaacttattcaagtggctttgaaac |
131 |
Q |
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| T |
24633296 |
cctaacttattcaagtggctctgaaac |
24633322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 24658983 - 24659042
Alignment:
| Q |
74 |
aaaaaacagtttaaatgaacactaatgacaacctaacttattcaagtggctttgaaactt |
133 |
Q |
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|||||||||||||| ||||||||||||||||||||| | | |||||||||||| ||||| |
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| T |
24658983 |
aaaaaacagtttaattgaacactaatgacaacctaattaagacaagtggctttggaactt |
24659042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 24671775 - 24671812
Alignment:
| Q |
185 |
tcatctgtgatcaacttcatcgtcttcccaataaattc |
222 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |
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| T |
24671775 |
tcatctgtgatcaactccatcctcttcccaataaattc |
24671812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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