View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3028_low_1 (Length: 975)
Name: NF3028_low_1
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_1 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 899; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 1 - 931
Target Start/End: Complemental strand, 41722901 - 41721971
Alignment:
| Q |
1 |
tatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722901 |
tatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatag |
41722802 |
T |
|
| Q |
101 |
gccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722801 |
gccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccaca |
41722702 |
T |
|
| Q |
201 |
cttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41722701 |
cttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactct |
41722602 |
T |
|
| Q |
301 |
gactgtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722601 |
gactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
41722502 |
T |
|
| Q |
401 |
gtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722501 |
gtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagat |
41722402 |
T |
|
| Q |
501 |
tttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41722401 |
tttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaa |
41722302 |
T |
|
| Q |
601 |
tgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722301 |
tgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgt |
41722202 |
T |
|
| Q |
701 |
acatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41722201 |
acatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggat |
41722102 |
T |
|
| Q |
801 |
aatttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722101 |
aatttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaa |
41722002 |
T |
|
| Q |
901 |
tcttcctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
41722001 |
tcttcatgtcttttctgtctcggtgaatttg |
41721971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 302 - 931
Target Start/End: Complemental strand, 34356200 - 34355571
Alignment:
| Q |
302 |
actgtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatg |
401 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34356200 |
actgtcacaatacacagtaattttctcttgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccatg |
34356101 |
T |
|
| Q |
402 |
tactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356100 |
tactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
34356001 |
T |
|
| Q |
502 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaat |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
34356000 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacatactgcaacacctaaggttcctttaat |
34355901 |
T |
|
| Q |
602 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355900 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
34355801 |
T |
|
| Q |
702 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggata |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34355800 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggata |
34355701 |
T |
|
| Q |
802 |
atttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355700 |
atttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
34355601 |
T |
|
| Q |
902 |
cttcctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34355600 |
cttcctgtcttttctgtctcggtgaatttg |
34355571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 34359667 - 34359375
Alignment:
| Q |
14 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359667 |
atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat |
34359568 |
T |
|
| Q |
114 |
cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctcta |
213 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| | |
|
|
| T |
34359567 |
cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcctcca |
34359468 |
T |
|
| Q |
214 |
ctacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgt |
306 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34359467 |
ctacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgtaaggcactctgactgt |
34359375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 869; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 15 - 931
Target Start/End: Original strand, 48697661 - 48698577
Alignment:
| Q |
15 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
48697661 |
tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc |
48697760 |
T |
|
| Q |
115 |
gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697761 |
gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
48697860 |
T |
|
| Q |
215 |
tacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48697861 |
tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatac |
48697960 |
T |
|
| Q |
315 |
acaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctg |
414 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697961 |
acagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctg |
48698060 |
T |
|
| Q |
415 |
tcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698061 |
tcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatg |
48698160 |
T |
|
| Q |
515 |
atcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698161 |
atcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgatt |
48698260 |
T |
|
| Q |
615 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698261 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
48698360 |
T |
|
| Q |
715 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcac |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698361 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcac |
48698460 |
T |
|
| Q |
815 |
aggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctttt |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698461 |
aggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctttt |
48698560 |
T |
|
| Q |
915 |
ctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48698561 |
ctgtctcggtgaatttg |
48698577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 15 - 931
Target Start/End: Original strand, 30946023 - 30946939
Alignment:
| Q |
15 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
30946023 |
tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc |
30946122 |
T |
|
| Q |
115 |
gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946123 |
gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
30946222 |
T |
|
| Q |
215 |
tacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946223 |
tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
30946322 |
T |
|
| Q |
315 |
acaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctg |
414 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946323 |
acagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctg |
30946422 |
T |
|
| Q |
415 |
tcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946423 |
tcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgtaagcgtgaacacataaccagtagtagattttcttttatcatg |
30946522 |
T |
|
| Q |
515 |
atcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946523 |
atcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgatt |
30946622 |
T |
|
| Q |
615 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946623 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
30946722 |
T |
|
| Q |
715 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcac |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946723 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcac |
30946822 |
T |
|
| Q |
815 |
aggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctttt |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946823 |
aggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctttt |
30946922 |
T |
|
| Q |
915 |
ctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30946923 |
ctgtctcggtgaatttg |
30946939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 5 - 931
Target Start/End: Complemental strand, 42270390 - 42269464
Alignment:
| Q |
5 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42270390 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca |
42270291 |
T |
|
| Q |
105 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
204 |
Q |
| |
|
||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
42270290 |
tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
42270191 |
T |
|
| Q |
205 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42270190 |
cttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
42270091 |
T |
|
| Q |
305 |
gtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
404 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270090 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
42269991 |
T |
|
| Q |
405 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269990 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
42269891 |
T |
|
| Q |
505 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42269890 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgta |
42269791 |
T |
|
| Q |
605 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269790 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
42269691 |
T |
|
| Q |
705 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42269690 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatt |
42269591 |
T |
|
| Q |
805 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269590 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
42269491 |
T |
|
| Q |
905 |
cctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42269490 |
cctgtcttttctgtctcggtgaatttg |
42269464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 108 - 931
Target Start/End: Complemental strand, 2003267 - 2002444
Alignment:
| Q |
108 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||||||||||| ||| || ||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
2003267 |
gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
2003168 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| ||||||| || || || |||||||| ||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
2003167 |
tctctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagaatggattccttgcaatatgcaatgcactctaactgtc |
2003068 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| |||||||||| || || |
|
|
| T |
2003067 |
acaatacacaacaatttgttgttgactgtgcccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcatagctgccatatattca |
2002968 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
2002967 |
gcttctgtagtagatagagctacgacagattgtaattttgacaaccaacttactgctcctcctgcaagtgtgaacacataaccagtagtagatcttcttt |
2002868 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || || || |
|
|
| T |
2002867 |
tatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatatatct |
2002768 |
T |
|
| Q |
608 |
catgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatc |
707 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2002767 |
caggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtacatatc |
2002668 |
T |
|
| Q |
708 |
atggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaa |
807 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
2002667 |
atggcatacataaggcttcccaccactgatgcatagggtactcgagacatttccatcctctctgcttcattgctaggattcatactggaggataatttat |
2002568 |
T |
|
| Q |
808 |
aattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcct |
907 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| | || |||||| |||||||||||||||| ||||| |
|
|
| T |
2002567 |
aattgataggaagtggggtagatattggcttacagtcttgcatgttgaagtgccgcaaaacttttcgtaaataatttctttgagaaagccaaatattcct |
2002468 |
T |
|
| Q |
908 |
gtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
2002467 |
atcttttctatctcgatgaatttg |
2002444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 843; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 5 - 931
Target Start/End: Original strand, 9439921 - 9440847
Alignment:
| Q |
5 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439921 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca |
9440020 |
T |
|
| Q |
105 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
204 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
9440021 |
tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
9440120 |
T |
|
| Q |
205 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9440121 |
cttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
9440220 |
T |
|
| Q |
305 |
gtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
404 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440221 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
9440320 |
T |
|
| Q |
405 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440321 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
9440420 |
T |
|
| Q |
505 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9440421 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgta |
9440520 |
T |
|
| Q |
605 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440521 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
9440620 |
T |
|
| Q |
705 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9440621 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatt |
9440720 |
T |
|
| Q |
805 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440721 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
9440820 |
T |
|
| Q |
905 |
cctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9440821 |
cctgtcttttctgtctcggtgaatttg |
9440847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 108 - 931
Target Start/End: Original strand, 24594424 - 24595247
Alignment:
| Q |
108 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||| ||||||| ||| || |||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
24594424 |
gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
24594523 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24594524 |
tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtc |
24594623 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
||||||||||| |||||||| || |||| |||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
24594624 |
acaatacacaacaatttgttgttgactgtggccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgtgtagctgccatatattca |
24594723 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| || ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
24594724 |
gcttctgtagtagatagagctacgacagattgtaattttgacaatcaacttatcgctcctcctgcaagtgtgaacacataaccagtagtagatcttcttt |
24594823 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || || || |
|
|
| T |
24594824 |
tatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatatatct |
24594923 |
T |
|
| Q |
608 |
catgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatc |
707 |
Q |
| |
|
|| ||||||||||||| ||| |||||| | |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
24594924 |
caggattctcttaacaacatcccaatgttttttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtaaatatc |
24595023 |
T |
|
| Q |
708 |
atggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaa |
807 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||| |
|
|
| T |
24595024 |
atggcatacataaggcttcccaccgctgatgcatagggtactcgagacatttccatcctctctgcttcattgctaggattcatactggagaataatttat |
24595123 |
T |
|
| Q |
808 |
aattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcct |
907 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| | || |||||| |||||||||||||||| ||||| |
|
|
| T |
24595124 |
aattgataggaagtggggtagatattggcttacaatcttgcatgttgaagcgccgcaaaacttttcgtaaataatttctttgagaaagccaaatattcct |
24595223 |
T |
|
| Q |
908 |
gtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
24595224 |
atcttttctatctcgatgaatttg |
24595247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
| Q |
12 |
acatgttcacaatctcccacttaaagtcacttttgtga |
49 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24594367 |
acatcttcacaatctcccacttaaagtcacttttgtga |
24594404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 835; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 5 - 931
Target Start/End: Original strand, 27874539 - 27875465
Alignment:
| Q |
5 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27874539 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca |
27874638 |
T |
|
| Q |
105 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
204 |
Q |
| |
|
||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
27874639 |
tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
27874738 |
T |
|
| Q |
205 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27874739 |
cttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
27874838 |
T |
|
| Q |
305 |
gtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
404 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874839 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
27874938 |
T |
|
| Q |
405 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874939 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
27875038 |
T |
|
| Q |
505 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27875039 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgta |
27875138 |
T |
|
| Q |
605 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875139 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
27875238 |
T |
|
| Q |
705 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27875239 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatt |
27875338 |
T |
|
| Q |
805 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875339 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
27875438 |
T |
|
| Q |
905 |
cctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27875439 |
cctgtcttttctgtctcggtgaatttg |
27875465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 2 - 931
Target Start/End: Original strand, 26976720 - 26977649
Alignment:
| Q |
2 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
26976720 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg |
26976819 |
T |
|
| Q |
102 |
ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
26976820 |
ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc |
26976919 |
T |
|
| Q |
202 |
ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
301 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976920 |
ttccctcctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
26977019 |
T |
|
| Q |
302 |
actgtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatg |
401 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26977020 |
actgtcacaatacacagtaattttctcctgcttgtgcccgagttcctccattaacctttgcacccagatagcttccttgcatgcttgggtagctgccatg |
26977119 |
T |
|
| Q |
402 |
tactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977120 |
tactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
26977219 |
T |
|
| Q |
502 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaat |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26977220 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaat |
26977319 |
T |
|
| Q |
602 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977320 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
26977419 |
T |
|
| Q |
702 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggata |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26977420 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggata |
26977519 |
T |
|
| Q |
802 |
atttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977520 |
atttaaaattcacaggaagtggggtagagattggcttacaatcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
26977619 |
T |
|
| Q |
902 |
cttcctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26977620 |
cttcctgtcttttctgtctcggtgaatttg |
26977649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 108 - 931
Target Start/End: Original strand, 1472398 - 1473220
Alignment:
| Q |
108 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||||||||||| ||| || |||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| | | |
|
|
| T |
1472398 |
gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttt |
1472497 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||| || || || |||||||| ||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
1472498 |
tctctactacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattacatgcaatgtgcaatgcactctgactgtc |
1472597 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
1472598 |
acaatacacaacaatttgttgttgactgtgcacgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccatatattca |
1472697 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||||||| || || |||||||| || || |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1472698 |
gcttctgtagtagagagagctacgacaatt-gtaattttgacaaccaacttactgctcctcctgcaagtgtgaacacataaccagtagtagatcttcttt |
1472796 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| | || || |||||| ||||||||| |||||| || |||||||||| || || || |
|
|
| T |
1472797 |
tatcaagatcacctgcaaaatctgaatcaacataacctttgacgataaattccaatcctctgaaacataatgcaacatctaaggttccttttatatatct |
1472896 |
T |
|
| Q |
608 |
catgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatc |
707 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1472897 |
caggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctgaccttgtacatatc |
1472996 |
T |
|
| Q |
708 |
atggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaa |
807 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||| |
|
|
| T |
1472997 |
atggcatacataaggcttcccaccgctgatgcatagggtactcgagacatttccatcctctctgcttcattgctaggattcataccggaagataatttat |
1473096 |
T |
|
| Q |
808 |
aattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcct |
907 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| | | |||||| |||||||||||||||| ||||| |
|
|
| T |
1473097 |
aattgataggaagtggggtagatattggcttacagtcttgcatgttgaagtgccgcaaaacttttcggaaataatttctttgagaaagccaaatattcct |
1473196 |
T |
|
| Q |
908 |
gtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
1473197 |
atcttttctatctcgatgaatttg |
1473220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 148 - 926
Target Start/End: Complemental strand, 21965725 - 21964961
Alignment:
| Q |
148 |
ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctat |
247 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||||||| ||||| |||| |||| |||||||| | |||||||| ||||||||||||| | |
|
|
| T |
21965725 |
ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgt |
21965626 |
T |
|
| Q |
248 |
gtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacaataatttgttcctgtttgtgcccgagttcc |
347 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||| || |||| |||| | |
|
|
| T |
21965625 |
gtgctccgttcttgaatgaaaagttggattccttgaaatgtgcaaggtactctgactgtca--atacacaataattcgttgctgcttatgcctaagttgc |
21965528 |
T |
|
| Q |
348 |
tccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttgg |
447 |
Q |
| |
|
|| ||||||||| |||||||||||| |||| |||||||| ||||||| | ||||| |||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
21965527 |
tcaattaaccttcgcatccaaatagtttccatgcatgctaaggtagctgtcttgtacgaagcttttgacgttgacagagctacaatagtttgtaacttgg |
21965428 |
T |
|
| Q |
448 |
acaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccct |
547 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||| ||| |||| |||||||| |||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
21965427 |
gtaaccaacttactgctcatcttggaagcgtgaacacatatccaatagttgattttctattatcatgatcaagtgcaaaattcgaatcaatataacccct |
21965328 |
T |
|
| Q |
548 |
gacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccgga |
647 |
Q |
| |
|
|| |||||||| | ||||||||||| ||| ||| |||||||||||||||||||| || |||| ||| || ||||| |||||||||| ||| | |
|
|
| T |
21965327 |
gatagttaactttaatcctccgaaa-atattgca-------aggttcctttaatgtacctcttg-ttcttttaccaacattctgatgctcttta-ccgaa |
21965238 |
T |
|
| Q |
648 |
tccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggta |
747 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| || ||||| || |
|
|
| T |
21965237 |
tctgccataaaccgactaactactcccactgcttgtgcaatgtctggtcttttacatatcatgacatacataaggcttccaaccgcgaatatatacgata |
21965138 |
T |
|
| Q |
748 |
ctcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattggcttacagtcttg |
847 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
21965137 |
ctcgagacattttcatcctctcttcttcattgttaggactcataccgaaggataatttaaaattcacaagaagtggggtagagattggctaacaatcttg |
21965038 |
T |
|
| Q |
848 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtga |
926 |
Q |
| |
|
||| || ||||| | ||||||||| |||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
21965037 |
catttttaagcgtcacaagacttttcttagatagtgcttttgag--agctaaatcttcctatcttttctgtctcggtga |
21964961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 18967543 - 18967256
Alignment:
| Q |
17 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | || ||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
18967543 |
ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga |
18967444 |
T |
|
| Q |
117 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18967443 |
caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta |
18967344 |
T |
|
| Q |
217 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
304 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
18967343 |
cttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatgaaaagttggattccttgcaatgtgtaaggcactctgact |
18967256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 353 - 475
Target Start/End: Complemental strand, 18967241 - 18967120
Alignment:
| Q |
353 |
taacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaac |
452 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||| ||| |
|
|
| T |
18967241 |
taacgtttgcatccaaatagcttcattgcatgcttgggtagctgcaatgtactcagcttctgtcgttgacagagctacaacag-ttgtaacttggataac |
18967143 |
T |
|
| Q |
453 |
caacttactgctcctcctgcaag |
475 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18967142 |
caacttactgctcctcctgcaag |
18967120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
| Q |
14 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga |
112 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||| || || |||||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
21966604 |
atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga |
21966511 |
T |
|
| Q |
113 |
tcgacaccatacaaactt |
130 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21966510 |
tcgacaccatacaaactt |
21966493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
| Q |
14 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30968629 |
atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc |
30968569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
| Q |
12 |
acatgttcacaatctcccacttaaagtcacttttgtga |
49 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1472341 |
acatcttcacaatctcccacttaaagtcacttttgtga |
1472378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 818; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 2 - 931
Target Start/End: Original strand, 5819102 - 5820031
Alignment:
| Q |
2 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
5819102 |
atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg |
5819201 |
T |
|
| Q |
102 |
ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac |
201 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
5819202 |
ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc |
5819301 |
T |
|
| Q |
202 |
ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
301 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819302 |
ttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
5819401 |
T |
|
| Q |
302 |
actgtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatg |
401 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
5819402 |
actgtcacaatacacagtaattttctcctgcttgtgcccgagttcctccattaacctttgcatccagatagcttccttgcatgcttgggtagctgccatg |
5819501 |
T |
|
| Q |
402 |
tactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819502 |
tactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatt |
5819601 |
T |
|
| Q |
502 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaat |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5819602 |
ttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaat |
5819701 |
T |
|
| Q |
602 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819702 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
5819801 |
T |
|
| Q |
702 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggata |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5819802 |
catatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggata |
5819901 |
T |
|
| Q |
802 |
atttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819902 |
atttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaat |
5820001 |
T |
|
| Q |
902 |
cttcctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5820002 |
cttcctgtcttttctgtctcggtgaatttg |
5820031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 5 - 931
Target Start/End: Complemental strand, 54545632 - 54544706
Alignment:
| Q |
5 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
54545632 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca |
54545533 |
T |
|
| Q |
105 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
204 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
54545532 |
tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
54545433 |
T |
|
| Q |
205 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
304 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
54545432 |
cttcctctactacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagttgaattccttgcaatgtgcaatgcactctgact |
54545333 |
T |
|
| Q |
305 |
gtcacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtac |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54545332 |
gtcacaatacacaataatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccatgtac |
54545233 |
T |
|
| Q |
405 |
tccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttc |
504 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
54545232 |
tcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctccggcaagtgtgaacacataaccagtagtagattttc |
54545133 |
T |
|
| Q |
505 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54545132 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgta |
54545033 |
T |
|
| Q |
605 |
cctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
704 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545032 |
cctcatgattctcttaacaacattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacat |
54544933 |
T |
|
| Q |
705 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatt |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54544932 |
atcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatt |
54544833 |
T |
|
| Q |
805 |
taaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54544832 |
taaaattcacaggaagtggggtagagattggcttacaatcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatctt |
54544733 |
T |
|
| Q |
905 |
cctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
54544732 |
cctgtcttttctgtctcggtgaatttg |
54544706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 108 - 931
Target Start/End: Complemental strand, 42589332 - 42588509
Alignment:
| Q |
108 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||| ||||||| ||| || |||| ||||| | ||||||||| | |||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
42589332 |
gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
42589233 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
42589232 |
tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactatgactgtc |
42589133 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
42589132 |
acaatacacaacaatttgttgttgactgtgcccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccatatattca |
42589033 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| || |||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
42589032 |
gcttctgtagtagatagagctacgacagattgtaattttgacaaccaacttaccgctcctcctgcaagtgtgaacacataaccagcagtagatcttcttt |
42588933 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| || |||||| |||||| || |||||||||| || || || |
|
|
| T |
42588932 |
tatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgacacataatgcaacatctaaggttccttttatatatct |
42588833 |
T |
|
| Q |
608 |
catgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatc |
707 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42588832 |
caggattctcttaacagcatcccaatgttctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtacatatc |
42588733 |
T |
|
| Q |
708 |
atggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaa |
807 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
42588732 |
atggcatacataaggcttcccaccactgatgcatagggtactcgagacatttctatcctctctgattcattgctaggattcatactggaggataatttat |
42588633 |
T |
|
| Q |
808 |
aattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcct |
907 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| | || |||||| |||||||||||||||| ||||| |
|
|
| T |
42588632 |
aattgataggaagtggggtagatattggcttacaatcttgcatgttgaagcgccgcanaacttttcgtaaataatttctttgagaaagccaaatattcct |
42588533 |
T |
|
| Q |
908 |
gtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
42588532 |
atcttttctatctcgatgaatttg |
42588509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 307 - 752
Target Start/End: Complemental strand, 25881030 - 25880583
Alignment:
| Q |
307 |
cacaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactc |
406 |
Q |
| |
|
|||||||||||| |||||||| || ||||||| || ||| ||||||| |||||| |||||||||||||||| ||| ||||| |||| | | || || || |
|
|
| T |
25881030 |
cacaatacacaacaatttgttgttgattgtgcctga-ttcttccattagcctttgtatccaaatagcttcctagcaagcttgcgtaggtacaatatattc |
25880932 |
T |
|
| Q |
407 |
cgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttctt |
506 |
Q |
| |
|
|| | ||| || || ||||| ||||| ||||||| || ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
25880931 |
agcatatgtagtagatagagcgacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtatgaacacataaccggtagtagattttttt |
25880832 |
T |
|
| Q |
507 |
tt---atcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcc---tttaa |
600 |
Q |
| |
|
|| |||| |||| ||||||||||||||||| ||||||||| | ||| | || || ||| ||||||||| |||||| |||||||| | ||| | |
|
|
| T |
25880831 |
tttttatcaagatctcctgcaaaatctgaatctacataaccctttacaataaattccaatct---gaaacataatgcaacatctgaggtttcctttttta |
25880735 |
T |
|
| Q |
601 |
tgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgt |
700 |
Q |
| |
|
| || |||| |||||| |||| | ||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25880734 |
tatatctcacgattcttttaataacatctcaatgctctttaccaggatccgccataaatcgactaattgctcccactgcttgtgcaatgtctggtcttgt |
25880635 |
T |
|
| Q |
701 |
acatatcatggcatacataaggcttcccaccgccgatgcatacggtactcga |
752 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
25880634 |
acatatcatggcatacataaggtttcccaccgctgatgcataaggtactcga |
25880583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 630 - 931
Target Start/End: Complemental strand, 25878161 - 25877861
Alignment:
| Q |
630 |
caatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttccca |
729 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25878161 |
caatgctctttaccaggatccgccataaatcgactaattgttctcactgcttgtgcaatgtctagtcttgtacatatcatgtcatacataagacttccca |
25878062 |
T |
|
| Q |
730 |
ccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtaga |
829 |
Q |
| |
|
| || |||||||| |||||| ||||||||| |||||||||| |||||||||||||| ||| || ||||||||||||| |||| | || || ||||||||| |
|
|
| T |
25878061 |
ctgctgatgcatagggtacttgagacattttcatcctctccgcttcattgctaggattcagacttgaggataatttataattgatagaaaatggggtaga |
25877962 |
T |
|
| Q |
830 |
gattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatt |
929 |
Q |
| |
|
||||||||||||||||| ||||||||| | | || ||||| | || |||||| ||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
25877961 |
tattggcttacagtcttg-atgttgaagtgtagaaaaacttttcgtatataatttgtttgagaaagcaaaatcttcctatcttttctatctcggtgaatt |
25877863 |
T |
|
| Q |
930 |
tg |
931 |
Q |
| |
|
|| |
|
|
| T |
25877862 |
tg |
25877861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 569 - 768
Target Start/End: Complemental strand, 25880578 - 25880379
Alignment:
| Q |
569 |
gaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaacc |
668 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || || |||| |||||| || | | ||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25880578 |
gaaacataatacaacatctgaggttccttttatatatctcaggattcttttgataccatcccaatgctctttaccaggatccgccataaatcgactaatt |
25880479 |
T |
|
| Q |
669 |
actcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctct |
768 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
25880478 |
acttccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgctgatgcataaggtactcgagacattttcatcctct |
25880379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 436 - 622
Target Start/End: Complemental strand, 25880348 - 25880165
Alignment:
| Q |
436 |
tttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatc |
535 |
Q |
| |
|
||||||| || ||||||||||||| |||||||| |||||| |||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
25880348 |
tttgtaattttgacaaccaacttattgctcctcttgcaagtgtgaacacataaccggtattagatattcttttatcacgatcacctataaaatctgaatt |
25880249 |
T |
|
| Q |
536 |
aacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaac |
622 |
Q |
| |
|
|||| ||||| ||||| | || || || | ||||||||| ||||| |||||||||||| || || |||| |||||||||||| |
|
|
| T |
25880248 |
aacaaaacccttgacaataaattccga---ttagaaacataatacaacatttgaggttccttttatatatctcaggattctcttaac |
25880165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
| Q |
12 |
acatgttcacaatctcccacttaaagtcacttttgtga |
49 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42589389 |
acatcttcacaatctcccacttaaagtcacttttgtga |
42589352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 791; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 13 - 931
Target Start/End: Complemental strand, 829958 - 829040
Alignment:
| Q |
13 |
catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga |
112 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
829958 |
catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga |
829859 |
T |
|
| Q |
113 |
tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct |
212 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| |||||| |
|
|
| T |
829858 |
tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcctct |
829759 |
T |
|
| Q |
213 |
actacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829758 |
actacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
829659 |
T |
|
| Q |
313 |
acacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttc |
412 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
829658 |
acacagtaattttctcctgcttgtgcccgagttcctccattaacctttgcatccagatagcttccttgcatgcttgggtagctgccatgtactcagcttc |
829559 |
T |
|
| Q |
413 |
tgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatca |
512 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829558 |
tgtcgttgacagagctacaacagtttgtaacttggataaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcc |
829459 |
T |
|
| Q |
513 |
tgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatga |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
829458 |
tgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctggggttcctttaatgtacctcatga |
829359 |
T |
|
| Q |
613 |
ttctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggc |
712 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829358 |
ttctcttaacaacattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggc |
829259 |
T |
|
| Q |
713 |
atacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattc |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829258 |
atacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattc |
829159 |
T |
|
| Q |
813 |
acaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctt |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
829158 |
acaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttaaataattcttttgagaaagccaaatattcctgtctt |
829059 |
T |
|
| Q |
913 |
ttctgtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
829058 |
ttctgtctcggtgaatttg |
829040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 930
Target Start/End: Complemental strand, 28715550 - 28714645
Alignment:
| Q |
13 |
catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga |
112 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | || | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| ||||| |
|
|
| T |
28715550 |
catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga |
28715451 |
T |
|
| Q |
113 |
tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct |
212 |
Q |
| |
|
||||||| ||| |||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
28715450 |
tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacact-ccctcctcc |
28715352 |
T |
|
| Q |
213 |
actacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
312 |
Q |
| |
|
|| ||| | |||||||||||||||||||| |||||||||||| |||||||| |||||| |||||| ||||||||||| | ||| ||||||| |
|
|
| T |
28715351 |
ac-actactcgaacaaaatgatattgaacacctatgtgcttcatccttgaacgaaaagttggatt----------tgcaaggcactataactatcacaat |
28715263 |
T |
|
| Q |
313 |
acacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttc |
412 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28715262 |
acacagtaatttgctcctgcttgtgcccgagtacctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccatgtactcagcttc |
28715163 |
T |
|
| Q |
413 |
tgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatca |
512 |
Q |
| |
|
|| |||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
28715162 |
tgacgttgacatagctacaacagtttgtaacttggataaccaacttactgctcctctcgcaagcatgaacacgtaaccagtaaaagattttctttcatca |
28715063 |
T |
|
| Q |
513 |
tgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatga |
612 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
28715062 |
tgatcaccggcaaaatctgaatcaacataacccatgacaattaactctgatcctccgaaacatattgcaacacatgaggttcctttaatgtacctcatga |
28714963 |
T |
|
| Q |
613 |
ttctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggc |
712 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
28714962 |
ttctcttaacaacattccaatgctctttataaggatctgtcataaaccgactaaccactcccactaattgtgcaatctctgatcttgtacatatcatggc |
28714863 |
T |
|
| Q |
713 |
atacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattc |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
28714862 |
atacataaggcttcccaccgccgatgcatacggtattcgagacatttacatcctctctgcttcattgctaggactcatacatgtggatagtttaaaattc |
28714763 |
T |
|
| Q |
813 |
acaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctt |
912 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||| ||||||||| || |||| |
|
|
| T |
28714762 |
atagaaagtggggtagagattggcttacagtcttgcatgttgaagtgccgcaagactttccttatacaattcttttgagaaaaccaaatctttctatctt |
28714663 |
T |
|
| Q |
913 |
ttctgtctcggtgaattt |
930 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
28714662 |
ttctatctcagtgaattt |
28714645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 12 - 914
Target Start/End: Original strand, 13840763 - 13841656
Alignment:
| Q |
12 |
acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- |
108 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
13840763 |
acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc |
13840862 |
T |
|
| Q |
109 |
-aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| ||||||| ||||| | ||| |||||| | || ||||||||||||| |||| |||||| | |
|
|
| T |
13840863 |
caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcctt |
13840962 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
| || ||||||| ||||||||||||||||||| | |||||| || ||||||||||||||| || ||| ||||||||||| |||||| ||| | |||| |
|
|
| T |
13840963 |
cgtcgactactttt-gaacaaaatgatattgaacacttatgtgttttgtccttgaatgaaaaa-tgaatttcttgcaatgtgaaaggcattctaattgtc |
13841060 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
|||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||| |||||| |||||||||| || || | || |||||||||||| |
|
|
| T |
13841061 |
acaatacatagtaatttgatgttgtttgtgcccaagttcctccattaacctttgcattcaaataacttccttgcaagcatgggaagatgccatgtactca |
13841160 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
| || ||||||||||| ||||||| || ||||||||| ||||||||||| ||||||| | || ||||||||||||| | |||||||||| | | |
|
|
| T |
13841161 |
g-ttttgtcgttgacaaagctaca-----ttctaacttggataaccaacttaccgctcctcgtataaacgtgaacacataatc---agtagattttatat |
13841251 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||||| |||| || || || |
|
|
| T |
13841252 |
tatcatgatcacttgtaaaatctgaatcaacataacccttgtcatttaactctgatcctccgaaacatattgcaacacttgaggtttctttgatatatct |
13841351 |
T |
|
| Q |
608 |
catgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatc |
707 |
Q |
| |
|
|| |||| |||||| ||| || | | |||||| |||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
13841352 |
caaaattcatttaaca-aatttaaaggatatttaccaggatatgccataaaccgactaaccactcccactatttgtgtagtgtctggtcttgtacatatc |
13841450 |
T |
|
| Q |
708 |
atggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaa |
807 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||||| | ||||||||| |
|
|
| T |
13841451 |
atggaatacataaggctttccaccatcaatgcatacggtactcgagacatctccatcctcactacttcatttctaggactgatacctacgaataatttaa |
13841550 |
T |
|
| Q |
808 |
aattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcct |
907 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
13841551 |
aattcacaggaagtgaggtagagattag-ttacaatcttgcatgttaaagtatcgcaagactttccatagataatcattttgagaaaggtaaatcttctt |
13841649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 747; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 17 - 931
Target Start/End: Original strand, 27877 - 28791
Alignment:
| Q |
17 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27877 |
ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga |
27976 |
T |
|
| Q |
117 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27977 |
caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta |
28076 |
T |
|
| Q |
217 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28077 |
cttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
28176 |
T |
|
| Q |
317 |
aataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctgtc |
416 |
Q |
| |
|
| |||||| ||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28177 |
agtaatttaatcctgcttgtgcacgagttcctccataaacctttgcaaccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctgtc |
28276 |
T |
|
| Q |
417 |
gttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatgat |
516 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28277 |
gttgacagagctacaacagtttgtaacttggataaccaacttactgctcctcctgaaagtgtgaacacataatcagtagtagattttcttttatcatgat |
28376 |
T |
|
| Q |
517 |
cacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattct |
616 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28377 |
cacctacaaaatctgaatcaacataacccctgacagttaactctgatcctctgaaacatattgcaacatccgaggttcctttaatgtacctcatgattct |
28476 |
T |
|
| Q |
617 |
cttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28477 |
cttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatac |
28576 |
T |
|
| Q |
717 |
ataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacag |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28577 |
ataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccgcttcattgctaggactcatacatgaggataatttaaaattcacaa |
28676 |
T |
|
| Q |
817 |
gaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttct |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28677 |
gaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttct |
28776 |
T |
|
| Q |
917 |
gtctcggtgaatttg |
931 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28777 |
gtctcggtgaatttg |
28791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 881
Target Start/End: Original strand, 2323956 - 2324791
Alignment:
| Q |
17 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2323956 |
ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga |
2324055 |
T |
|
| Q |
117 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
216 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2324056 |
caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttacta |
2324155 |
T |
|
| Q |
217 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
316 |
Q |
| |
|
|||| ||||||||||||||| ||||| | |||| ||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
2324156 |
cttctcgaacaaaatgatat-gaacgtcaatgttctttgtctttgaatgaaaagatggattccttgcaatgtccac------ctgactgccacaatacaa |
2324248 |
T |
|
| Q |
317 |
aataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactccgcttctgtc |
416 |
Q |
| |
|
| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2324249 |
agtgattttctcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccatgtacttagcttctgtc |
2324348 |
T |
|
| Q |
417 |
gttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttttatcatgat |
516 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2324349 |
gttgacaaagctacaacagtttgtaacttggataactaacttacaactcctcctgcaagtgtgaacacataactagtagtagattttcttttatcatgat |
2324448 |
T |
|
| Q |
517 |
cacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattct |
616 |
Q |
| |
|
|||||||||||||||| |||| | | |||| || ||||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
2324449 |
cacctgcaaaatctgactcaagaaatcccccaacggttaactctgatcctccgaaacatattgcaacacctgaggttccttttatatacatcatgattct |
2324548 |
T |
|
| Q |
617 |
cttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatac |
716 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||| |||| ||||| |
|
|
| T |
2324549 |
cttaacagcattccaatgctctttaccaagatccgccataaaccgaccaacca----------------------tggtcttgtgcataccatgacatac |
2324626 |
T |
|
| Q |
717 |
ataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacag |
816 |
Q |
| |
|
| ||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
2324627 |
aaaaggcttcccaccacctatgcatacggtactcgagatatttccatcctctctgcttcattactaggactcatacttgaggataatttaaaattcaaag |
2324726 |
T |
|
| Q |
817 |
gaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataa |
881 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2324727 |
gaagtggggtagaggctggcttacagtcttgcatgttgaagcgttagaagactttccttagataa |
2324791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 108 - 622
Target Start/End: Original strand, 7504696 - 7505210
Alignment:
| Q |
108 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
207 |
Q |
| |
|
||||||||||||||| ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || ||||| || | |
|
|
| T |
7504696 |
gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctt |
7504795 |
T |
|
| Q |
208 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
307 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| ||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7504796 |
tctctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtc |
7504895 |
T |
|
| Q |
308 |
acaatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccatgtactcc |
407 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
7504896 |
acaatacacaacaatttgttgttgactgtgcacgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccatatattca |
7504995 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||||||| || || |||||||| || |||||| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
7504996 |
gcttctgtagtagatagagctacgacaaattgtaattttgacaatcaacttaccgctcctcctgcaagtgtgaacacataaccagtagtagatcttcttt |
7505095 |
T |
|
| Q |
508 |
tatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacct |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || || || |
|
|
| T |
7505096 |
tatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatatatct |
7505195 |
T |
|
| Q |
608 |
catgattctcttaac |
622 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
7505196 |
caggattctcttaac |
7505210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 615 - 931
Target Start/End: Original strand, 7506016 - 7506332
Alignment:
| Q |
615 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
714 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7506016 |
ctcttaacaacatcccaatgctctttaccaggatccgccataaattgactagccgctcccactgcttgtgcaatgtctggccttgtacatatcatggcat |
7506115 |
T |
|
| Q |
715 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcac |
814 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||| |||| | |
|
|
| T |
7506116 |
acataaggcttcccaccgctgatgcatagggtactcgagacatttccatcctatctacttcattgctaggattcatactagaggataatttataattgat |
7506215 |
T |
|
| Q |
815 |
aggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtctttt |
914 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| ||||| | ||| | || |||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
7506216 |
aggaagtggggtagatattggcttacagttttgcatgttgaagcgccgcaaaatttttcgtaaataatttctttgagaaagccaaatattcctatctttt |
7506315 |
T |
|
| Q |
915 |
ctgtctcggtgaatttg |
931 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
7506316 |
ctatctcgatgaatttg |
7506332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 10 - 578
Target Start/End: Complemental strand, 22510398 - 22509834
Alignment:
| Q |
10 |
acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga |
109 |
Q |
| |
|
|||||||||||| ||||| | |||||| | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| |||| ||||||||| | |
|
|
| T |
22510398 |
acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag |
22510301 |
T |
|
| Q |
110 |
ggatcgacaccatacaaacttatcagtgttgatcgg-ctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc |
208 |
Q |
| |
|
|||| ||||||||| |||||||||| | ||||| | |||| |||| ||||||||| | ||||||| || ||||||||| |||| |||||| |||||| |
|
|
| T |
22510300 |
ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc |
22510201 |
T |
|
| Q |
209 |
ctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtca |
308 |
Q |
| |
|
||| || ||| || |||||| |||||||||||| ||||| ||||| | |||| |||| |||||| |||| |||||||||| |||||||||| ||| |
|
|
| T |
22510200 |
ctccacaactaatacaaaaaaatggtattgaacgcctttgtgcatcgtcttggaatacaaagttggattgcttgaaatgtgcaagacactctgactatca |
22510101 |
T |
|
| Q |
309 |
caatacacaataatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagta-gctgccatgtactcc |
407 |
Q |
| |
|
||||||| | ||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||||| | | |||| || ||||||| || |
|
|
| T |
22510100 |
caatacaaagtaatttgttgatacttgtgcgcgagttcctccattaaccttatcatccaaatagcttccttgcaaacct-agtatacttccatgtattca |
22510002 |
T |
|
| Q |
408 |
gcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagattttcttt |
507 |
Q |
| |
|
|||| | |||||||||||| |||| || ||||||||||||||||| |||||||||||| | ||| ||||| ||||| ||||| || || ||| |
|
|
| T |
22510001 |
atttctcttgttgacagagcttcaacaattggtaacttggacaaccaaattactgctcctcttacaaatgtgaa-----aaccaatagtatatatttttt |
22509907 |
T |
|
| Q |
508 |
t--atcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataac |
578 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| |
|
|
| T |
22509906 |
tcaatcatgatcaccttcaaaatctgaatcaacataacacctaatggttaactttgatcctccgaaacataac |
22509834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 37957162 - 37957033
Alignment:
| Q |
109 |
aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc |
208 |
Q |
| |
|
|||||||||| |||| |||||||||| || || | ||||||||| ||| ||||||| ||| || ||||||||| ||||||||||||||||| || |
|
|
| T |
37957162 |
aggatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttc |
37957063 |
T |
|
| Q |
209 |
ctctactacttcgcgaacaaaatgatattg |
238 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |
|
|
| T |
37957062 |
ctctactacttcgcaaacataatgatattg |
37957033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
| Q |
12 |
acatgttcacaatctcccacttaaagtcacttttgtga |
49 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
7504639 |
acatcttcacaatctcccacttaaagttacttttgtga |
7504676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 496 - 931
Target Start/End: Complemental strand, 34973530 - 34973095
Alignment:
| Q |
496 |
tagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcc |
595 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
34973530 |
tagattttcttttattatgatcatctgcaaaatctgaatcgacataacccctaacagttaaatttgatcctccgaatcatattgcaacacctgaggttcc |
34973431 |
T |
|
| Q |
596 |
tttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggt |
695 |
Q |
| |
|
|||| |||||||||| ||||| | ||| |||| ||||||||||| |||||| ||| |||| |||||||||||| | ||| |||| |||||||| || |
|
|
| T |
34973430 |
tttattgtacctcataattctatcgacatcattttgatgctctttactaggatcctccacaaactgactaaccactctcgctgtttgttcaatgtcttgt |
34973331 |
T |
|
| Q |
696 |
cttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctg |
795 |
Q |
| |
|
||||||||||| | | ||||||||||||||| || ||||||||||||||||||| ||||||||| | ||| ||| |||||||| |||||||||||| || |
|
|
| T |
34973330 |
cttgtacatataaagacatacataaggcttctcattgccgatgcatacggtactcaagacatttctaccctatccgcttcattgttaggactcatacatg |
34973231 |
T |
|
| Q |
796 |
aggataatttaaaattcacaggaagtggggtagagattggcttacagtcttgcatgttgaagcggcgcaagactttccttagataattcttttgagaaag |
895 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| |
|
|
| T |
34973230 |
aggataatttaaaactcactggaagtagggtagagattggattacagtcttgcatgttgaagtaccgtaagactttccttagataattcatttaagaaag |
34973131 |
T |
|
| Q |
896 |
ccaaatcttcctgtcttttctgtctcggtgaatttg |
931 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
34973130 |
ccaaatcttcttgtcttttctgtcttggtgagtttg |
34973095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 147 - 382
Target Start/End: Complemental strand, 34973826 - 34973589
Alignment:
| Q |
147 |
tttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgccta |
246 |
Q |
| |
|
|||||| | |||||| ||| |||||||| |||||||||||| |||| |||||||||| ||| || |||||||| | || ||||||||||| || ||||| |
|
|
| T |
34973826 |
tttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgccta |
34973727 |
T |
|
| Q |
247 |
tgtgcttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacaataatttgttcctgtttgtgcccgagt |
344 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||| | | ||||||||||| |||| | ||| ||| ||||||||||||| | || || ||||| | ||| |
|
|
| T |
34973726 |
tttgcttcgtccttgaatgaaaaaagttggatttcatacaatgtgcaagacactttaactttcataatacacaataatgtcttgatgcttgtgtctaagt |
34973627 |
T |
|
| Q |
345 |
tcctccattaacctttgcatccaaatagcttccttgca |
382 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34973626 |
ccctccattaacctttgcatccaaacagcttccttgca |
34973589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 223 - 378
Target Start/End: Original strand, 41413628 - 41413783
Alignment:
| Q |
223 |
gaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacaataat |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||| || |||||||| ||||||||||||||| |||||| ||| |||||||| |||||||| |
|
|
| T |
41413628 |
gaacaaaatgatattgaacgcctacatgccttgtccttgaatggaaggctggattacttgcaatgtgcaagacactctaactatcacaatatacaataat |
41413727 |
T |
|
| Q |
323 |
ttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttcct |
378 |
Q |
| |
|
||||| ||| |||| ||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
41413728 |
ttgttattgtctgtgtttgagttcctcaattaacatttgcatcaaaatagcttcct |
41413783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
| Q |
15 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
114 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||| |||||| |||||| ||||| ||||||| | || ||||||| ||||| ||||| ||| ||||| ||| |
|
|
| T |
41413422 |
tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc |
41413521 |
T |
|
| Q |
115 |
ga |
116 |
Q |
| |
|
|| |
|
|
| T |
41413522 |
ga |
41413523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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