View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_11 (Length: 399)
Name: NF3028_low_11
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 33316903 - 33317280
Alignment:
| Q |
15 |
cacagacttattaaagtaattattgacttgctttgatgcatttgataattgctatacatcttttacttgactcttttgttctaaatatacaagatattac |
114 |
Q |
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| T |
33316903 |
cacagacttattaaagtaattattgacttgctttgatgcatttgataattgctatacatcttttacttgactcttttgttctaaatatacaagatattac |
33317002 |
T |
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| Q |
115 |
gaattttgtataatcatttacttacttactagagacctgcgctcgcagatctcaaccaatgaatgaagatctgacg------------agctgtatttta |
202 |
Q |
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| T |
33317003 |
gaattttgtataatcatttacttacttactagagacctgcgcttgcagatctcaaccaatgaatgaagatctgacgagctgtatttcaagctgtatttta |
33317102 |
T |
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| Q |
203 |
aactctacttgatgaagtcagagtcgtctgatcattatccaacgatcacgatcattgacaacaattgcagggtttaccgaccatagagaatttgagtccg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33317103 |
aactctacttgatgaagtcagagtcgtctgatcattttccaacgatcacgatcattgacaacaattgcagggtttaccgaccatagagaattggagtccg |
33317202 |
T |
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| Q |
303 |
tcgatcagaacttaagagattctagtgatactgtaatgtctttgtcatctcttacagtttcttactttccttcctttt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33317203 |
tcgatcagaacttaagagattctagtgatactgtaatgtctttgtcatctcttacagtttcttactttccttcctttt |
33317280 |
T |
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