View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_14 (Length: 361)
Name: NF3028_low_14
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 42558019 - 42558366
Alignment:
| Q |
7 |
tcgaagaatatcacattgccaattgagttaatttttacgaacttacgtacnnnnnnnnaatgtgtaaattatgtatacttaaatgaattttgaaagnnnn |
106 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||| |
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| T |
42558019 |
tcgaacaatatcgcattgccaattgagttaatttttacgaacttacatacttttttttaatacgtaaattatgtatactttaatgaattttgaaagaaaa |
42558118 |
T |
|
| Q |
107 |
nnnnt--tcaannnnnnnncatattttagattccttacaaaaatcattcaaaagtttttaatgca---tttatgcctgtacgcaaagttctgcttgctgt |
201 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42558119 |
aaaaaaatcaattttttt-cattttttagattccttaaaaaaatcattcaaaagtttttaatgcaacatttatgcctgtacgcaaagttctgcttgctgt |
42558217 |
T |
|
| Q |
202 |
tactataaatagtacactaccagctgcagtgtcagtttttcttttcacgaataaggaatgaatgttgattggtc--------ataagtactttacttctg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
42558218 |
tactataaatagtacactaccagctgcagtgtcagtttttctttttacgaataaggaatgaatgttgattggtcagttgtatataagtactgaacttctg |
42558317 |
T |
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| Q |
294 |
tttccatatccatattaatggttctagatcaagaattattactctaatt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42558318 |
tttccatatccatattaatggttctagatcaagaattattactctaatt |
42558366 |
T |
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