View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3028_low_16 (Length: 317)

Name: NF3028_low_16
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3028_low_16
NF3028_low_16
[»] chr2 (2 HSPs)
chr2 (5-188)||(3680521-3680706)
chr2 (200-297)||(3678705-3678802)
[»] chr8 (4 HSPs)
chr8 (122-185)||(40792508-40792572)
chr8 (122-171)||(2071870-2071920)
chr8 (131-170)||(961663-961702)
chr8 (71-113)||(2071811-2071853)
[»] chr7 (1 HSPs)
chr7 (131-175)||(44679544-44679588)
[»] chr3 (1 HSPs)
chr3 (122-185)||(14651405-14651469)
[»] chr1 (1 HSPs)
chr1 (131-172)||(46581471-46581512)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 3680706 - 3680521
Alignment:
Q  5 tagatttgacagaattgcttttaaaaaaa-tataacataatggaaaagttattaacacnnnnnnnnntggaaaagttataatatattttttaaaatagta 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  3680706 tagatttgacagaattgcttttaaaaaaaatataacataatggaaaagttattaacacaaaaaaaaatggaaaagttataatatattttttaaaatagta 3680607  T
Q  104 agttataatcnnnnnnncacttacacctttttt-ggaatattgagaaacaaaatacattttgtataaatctatactttttcaaacc 188  Q
    ||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3680606 agttataatctttttttcacttacacctttttttggaatattgagaaacaaaatacattttgtataaatctatactttttcaaacc 3680521  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 3678802 - 3678705
Alignment:
Q  200 ttaaacatttaacaagataaactcacctttatttcatgatcaattaaaaaagcaatacaagcaggtatgaaatcataaaaatgagattaagcatcttg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3678802 ttaaacatttaacaagataaactcacctttatttcatgatcaattaaaaaagcaatacaaggaggtataaaatcataaaaatgagattaagcatcttg 3678705  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 40792508 - 40792572
Alignment:
Q  122 acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaatctatactttttcaa 185  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  40792508 acttacacctttttttggaatattgataaacaaaatacattttgtataaatctatgcattttcaa 40792572  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 2071870 - 2071920
Alignment:
Q  122 acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaat 171  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  2071870 acttacacctttttttggaatattgaaaaacaaaatatattttgtataaat 2071920  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 961663 - 961702
Alignment:
Q  131 ttttttggaatattgagaaacaaaatacattttgtataaa 170  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  961663 ttttttggaatattgacaaataaaatacattttgtataaa 961702  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 2071811 - 2071853
Alignment:
Q  71 tggaaaagttataatatattttttaaaatagtaagttataatc 113  Q
    ||||||||||||||||||||||  |||||| ||||||||||||    
T  2071811 tggaaaagttataatatattttaaaaaataataagttataatc 2071853  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 44679544 - 44679588
Alignment:
Q  131 ttttttggaatattgagaaacaaaatacattttgtataaatctat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44679544 ttttttggaatattgagaaacaaaatacattttgtataaatctat 44679588  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 14651405 - 14651469
Alignment:
Q  122 acttacacctttt-ttggaatattgagaaacaaaatacattttgtataaatctatactttttcaa 185  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  14651405 acttacacctttttttggaatattgataaacaaaatacattttgtataaatctatgcattttcaa 14651469  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 46581471 - 46581512
Alignment:
Q  131 ttttttggaatattgagaaacaaaatacattttgtataaatc 172  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  46581471 ttttttggaatattgacaaataaaatacattttgtataaatc 46581512  T

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