View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_17 (Length: 304)
Name: NF3028_low_17
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 24568146 - 24568395
Alignment:
| Q |
45 |
cacgtgttgcagtaatgtataatgtgcatggggatgtacatatgaatgaacatgtaatatatgatcatgcccaacaaataagggaccacaaccgtgtgaa |
144 |
Q |
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| T |
24568146 |
cacgtgttgcagtaatgtataatgtgcatggggatgtacatatgaatgaacatgtaatatatgatcatgcccaacaaataagggaccacaaccgtgtgaa |
24568245 |
T |
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| Q |
145 |
agggaagacaccaatatcgaacaattaaggccttctaatgagtgcaaaccgtccttcacatattctatctggtatctgcaattatattataattccaaat |
244 |
Q |
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| T |
24568246 |
agagaagacaccaatatcgaacaattaaggccttctaatgagtgcaaaccgtccttcacatattctatctggtatctgcaattatattataattccaaat |
24568345 |
T |
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| Q |
245 |
tgtgcaaaagtttgcgatattcaaagttagaatatgctttagcccctatg |
294 |
Q |
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| T |
24568346 |
tgtgcaaaagtttgcaatattcaaaggtagaatatgctttagcccctatg |
24568395 |
T |
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