View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_18 (Length: 280)
Name: NF3028_low_18
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6753283 - 6753545
Alignment:
| Q |
1 |
tggaaattgtttacaagatcttttaaaatctaggaggggtagaattggaaaatacttaattttccataactaggaaacggcattaacagtcaaagagtat |
100 |
Q |
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| T |
6753283 |
tggaaattgtttacaagatcttgtaaaatctaggaggggtagaattggaaaatacttaattttccataactaggaaacggcattaacagtcaaagagtat |
6753382 |
T |
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| Q |
101 |
gagaaaacgtgtttgtttaaactttaattagtgttagaactttttgttggaaagatgttgatgaaaattgcacttggagaaattcaaagcgtgtgaattg |
200 |
Q |
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| T |
6753383 |
gagaaaacgtgtttgtttaaactttaattagtgttagaactttttgttggaaagatgttgatgaaaattgcacttggagaaattcaaagcgtgtgaattg |
6753482 |
T |
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| Q |
201 |
taatcacactaacctttagaatcaattttcccccaccaacttttgaatgttggatgcaaatgg |
263 |
Q |
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| T |
6753483 |
taatcacactaacctttaaaatcaattttcccccaccaacttttgaatgttggatgcaaatgg |
6753545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6762587 - 6762534
Alignment:
| Q |
1 |
tggaaattgtttacaagatcttttaaaatctaggaggggtagaattggaaaata |
54 |
Q |
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| T |
6762587 |
tggaaattgtttacaagatcttttaaaatctaggaggggtagaattggaaaata |
6762534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 6762756 - 6762833
Alignment:
| Q |
56 |
ttaattttccataactaggaaacggcattaacagtcaaagagtatgaga-aaacgtgtttgtttaaactttaattagt |
132 |
Q |
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| T |
6762756 |
ttaattttccagatctaggacacggcattaacagtaaaagagtatgagagaaacgtgtttgttgcaactttaactagt |
6762833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 33903877 - 33903802
Alignment:
| Q |
152 |
aagatgttgatgaaaattgcacttggagaaattcaaagcgtgtgaattgtaatcacactaacctttagaatcaattt |
228 |
Q |
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| T |
33903877 |
aagatgtcgatgaaaattacacttggagaaatttaaagtgtgtg-attgtgattaaactaacctttagagtcaattt |
33903802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 928363 - 928445
Alignment:
| Q |
181 |
aattcaaagcgtgtgaattgtaatcacactaacctttagaatcaattttcccccaccaacttttgaatgttggatgcaaatgg |
263 |
Q |
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|||| |||||||||||||||| |||||||||||||||| | |||||| | | ||||||||| | || |||||||||||||| |
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| T |
928363 |
aatttaaagcgtgtgaattgtgatcacactaacctttaaagtcaattcgctctcaccaacttgtagatattggatgcaaatgg |
928445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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