View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_2 (Length: 809)
Name: NF3028_low_2
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 74 - 477
Target Start/End: Original strand, 32425592 - 32425995
Alignment:
| Q |
74 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcttacgctactccaaattaaggcggatacgttcctccaaatcaagct |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425592 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgcttacgctactccaaattaaggcggatacgttcctccaaatcaagct |
32425691 |
T |
|
| Q |
174 |
ggacacgcctctgcaaatccaggcggataagcttctccaaatgcaggatgggcaaataatcagtagactctcgtcctgattggaacacatgctgcatgaa |
273 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425692 |
ggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcaggatgggcaaataatcagtagactctcgtcctgattggaacacatgctgcatgaa |
32425791 |
T |
|
| Q |
274 |
attatgatccagacaaattcttttggccaatgtagataaaatattgaattacgtccgagacatgcaggatttatattatgtttaccaagtaatgagattt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425792 |
attatgatccagacaaattcttttggccaatgtagataaaatattgaattacgtccgagacatgcaggatttatattatgtttaccaagtaatgagattt |
32425891 |
T |
|
| Q |
374 |
tattgtgatcttgtgtttagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcg |
473 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425892 |
tattgtgatcttgtgtctagtttcccttcttcctaatgaatttgcgtttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcg |
32425991 |
T |
|
| Q |
474 |
aaag |
477 |
Q |
| |
|
|||| |
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| T |
32425992 |
aaag |
32425995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 494 - 799
Target Start/End: Original strand, 32425982 - 32426288
Alignment:
| Q |
494 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
593 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
32425982 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtatcatagtttattagtaaaaaaatatatttatctg |
32426081 |
T |
|
| Q |
594 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtctcacggaatgtctaactgtcaaccattattaattccattttct |
693 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
32426082 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtcttacggaatgtctaactgtcaaccatgattaattccattttct |
32426181 |
T |
|
| Q |
694 |
taactgaaagtgtaaacaaaattttc-nnnnnnntgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
792 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426182 |
taactgaaagtgtaaacaaaattttcaaaaaaaatgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
32426281 |
T |
|
| Q |
793 |
aggttct |
799 |
Q |
| |
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||||||| |
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|
| T |
32426282 |
aggttct |
32426288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 32425516 - 32425572
Alignment:
| Q |
19 |
acataacatgatgcttggtggacttctttgattccctctcactaggtgagccctttat |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32425516 |
acataacatgatgcttggtggacttctttgattccctctcacta-gtgagccctttat |
32425572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 32421305 - 32421347
Alignment:
| Q |
74 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
116 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
32421305 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
32421347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 32421822 - 32421859
Alignment:
| Q |
208 |
ctccaaatgcaggatgggcaaataatcagtagactctc |
245 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||| |
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| T |
32421822 |
ctccaaatgctggatggtcaaataatcagtagactctc |
32421859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 494 - 661
Target Start/End: Original strand, 1544180 - 1544349
Alignment:
| Q |
494 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
593 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
1544180 |
ggtttattcgaaagttaagtgtca--gtttattaaaacaaaattgtctgatacacttcattaagtatcgtagtttattagt-aaaaaatatatttatctg |
1544276 |
T |
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| Q |
594 |
atacacttcagttgaatagtcgtgagaaatttataatc-----atcatctttgtgatttgtctcacggaatgt |
661 |
Q |
| |
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| T |
1544277 |
acacacttaagccgaatagtcgtgagaaattcatgatcatgatatgatctttgtgatttgtcttactgaatgt |
1544349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 477
Target Start/End: Original strand, 1544078 - 1544193
Alignment:
| Q |
361 |
agtaatgagattttattgtgatcttgtgtttagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcac-atttgtgaagttcattgttt |
459 |
Q |
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|||||||||||||||| | ||||| || ||||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||| ||| |
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| T |
1544078 |
agtaatgagattttatag--atcttaggtctagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattt |
1544175 |
T |
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| Q |
460 |
tgatggtttattcgaaag |
477 |
Q |
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|||||||||||||||||| |
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| T |
1544176 |
tgatggtttattcgaaag |
1544193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 1543553 - 1543610
Alignment:
| Q |
19 |
acataacatgatgcttggtggacttctttgattccctctcactaggtgagccctttat |
76 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| | ||| ||||||||||| |
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|
| T |
1543553 |
acataacatgatgcttggtggacttgtttgtttccctctcgccaggggagccctttat |
1543610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 1543630 - 1543672
Alignment:
| Q |
74 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
116 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
1543630 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
1543672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 1544026 - 1544071
Alignment:
| Q |
207 |
tctccaaatgcaggatgggcaaataatcagtagactctcgtcctga |
252 |
Q |
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||||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
1544026 |
tctccaaatgctggttggtcaaataatcagtagactctcgtcctga |
1544071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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