View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3028_low_3 (Length: 740)

Name: NF3028_low_3
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3028_low_3
NF3028_low_3
[»] chr3 (1 HSPs)
chr3 (15-721)||(46072049-46072738)


Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 15 - 721
Target Start/End: Complemental strand, 46072738 - 46072049
Alignment:
Q  15 catcatcgaatggtggcgtgccattttgggacaggaacgctgcaggtaagtctgatgaatctgtcagtaaggagcctgaagtgtgtgaagatagaagaag 114  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072738 catcattgaatggtggcgtgccattttgggacaggaacgctgctggtaagtctgatgaatctgtcagtaaggagcctgaagtgtgtgaagatagaagaag 46072639  T
Q  115 gccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgtttgttacccttttcggctacatttgtatatataccaaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072638 gccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgtttgttacccttttcggctacatttgtatatataccaaaaa 46072539  T
Q  215 agccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaacaaggacatagatgaattgcattgannnnnnngggttct 314  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||    
T  46072538 ggccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaacagggacatagatgaattgcattgatttttttgggttct 46072439  T
Q  315 tataactcgtttggttaaccattttgtgctcaaggtgtcggatgaaatgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggta 414  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072438 tataactcgtttggttaaccattttgtgctcaaggtgtcagatgaaatgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggta 46072339  T
Q  415 tatcaactctcagcctctatactgaagtgggagatatattttctgttaagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcct 514  Q
    |||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072338 tatcaactctcagcctc-----------------tatattttctgttaagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcct 46072256  T
Q  515 ttattttgtagatgtgttctgccagttttctttatcaaaaggaatatcattcaatatttgcatataatttaattaagtttatacactgctatgaatagtt 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  46072255 ttattttgtagatgtgttctgccagttttctttatcaaaaggaatatcattcaatatttgcatataatttaattaattttacacactgctatgaatagtt 46072156  T
Q  615 cttcaaatctctcggggtatccactgtgcgtgtggatactaatgttggtgcttttctataggtcaaattttagcttacaatcgttggttaaattgaaaag 714  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072155 cttcaaatctctcggggtatccactatgcgtgtgggtactaatgttggtgcttttctataggtcaaattttagcttacaatcgttggttaaattgaaaag 46072056  T

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