View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_6 (Length: 539)
Name: NF3028_low_6
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 49542308 - 49542615
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggagg--agaagaagaagatgatgagaacccacgcactttaaacc |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49542308 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggaggggagaagaagaagatgatgagaacccacgcactttaaacc |
49542407 |
T |
|
| Q |
99 |
tagtaaaaaccttgcgagaaaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggcca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49542408 |
tagtaaaaaccttgcgagaaaacattgtcgaggaggagaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggcca |
49542507 |
T |
|
| Q |
199 |
tggcaagggg----agatgaaattgcagtgaggaccacatgccacattatattatgactggctatttcatgtacaatagttaaaattataaatcaccgat |
294 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49542508 |
tggcaagggggagatgatgaaattgcaatgaggaccacatgccac-----actatgactggctatttcatgtacaatagttaaaattataaatcaccaat |
49542602 |
T |
|
| Q |
295 |
ttctcctcatgcc |
307 |
Q |
| |
|
||||||||||||| |
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|
| T |
49542603 |
ttctcctcatgcc |
49542615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 305 - 518
Target Start/End: Original strand, 49542656 - 49542867
Alignment:
| Q |
305 |
gccagccagaagtgctcacccggtgatggcgtcacactgccttctcttgtcactgttttttactctcaattctctctgctaactggtaatttcaccttct |
404 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49542656 |
gccagccagaagtgctcacgcggtgatggcgtcacactgccttctcttgtcactgttttttactc--aattctctctgctaactggtaatttcaccttct |
49542753 |
T |
|
| Q |
405 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgctattcaaggtttatctatgtactttgttttgacctttttca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49542754 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgcttttcaaggtttatctatgtactttgttttgacctttttca |
49542853 |
T |
|
| Q |
505 |
caacttgctgctat |
518 |
Q |
| |
|
||| |||||||||| |
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| T |
49542854 |
caatttgctgctat |
49542867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 360 - 532
Target Start/End: Original strand, 47608047 - 47608216
Alignment:
| Q |
360 |
ttttttactctcaattctctctgctaactggtaatttcaccttcttcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttc |
459 |
Q |
| |
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|||||| | ||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
47608047 |
tttttttcgctcaattctctatgctaaatggtaatttcaccttc---ttcttcttccgttgcacattaactatttgattcaacgaattaacacgttcttc |
47608143 |
T |
|
| Q |
460 |
ttgctattcaaggtttatctatgtactttgttttgacctttttcacaacttgctgctatagacttctctgctg |
532 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||| ||| |||||||||| |
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|
| T |
47608144 |
ttgcttttcaaggtttatctatgtactttgttctcacctttttcacaacctgctgctacagatttctctgctg |
47608216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40918481 - 40918602
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatac------ctcgggaggagaagaagaagatgatgagaacccacgcacttta |
94 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||| |
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| T |
40918481 |
gctaaacccagagggcacgggacagctgtcaatgtgccaccatactgatactgaaaccttgggaggagaagaata---tgatgagaacccacgcacttta |
40918577 |
T |
|
| Q |
95 |
aacctagtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
40918578 |
aacgtagtaaaaaccttgcgagaaa |
40918602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 41783239 - 41783354
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggaggagaagaagaagatgatgagaacccacgcactttaaaccta |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || ||||| || || |
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| T |
41783239 |
gctaatcccagaaggcacgacacagctgtcaaggtgccaccatactgaaacctc---aggaaaagaagaagatgatgagaactgacccacttgaattctg |
41783335 |
T |
|
| Q |
101 |
gtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
41783336 |
gtaaaaaccttgcgagaaa |
41783354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 53729737 - 53729660
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggaggagaagaagaagatgatga |
78 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |
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|
| T |
53729737 |
gctaaccccagaaggcacgggagagctgtcaaggtgccaccatactgaaacctcaggaaaagaagaagatgatgatga |
53729660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 40918643 - 40918717
Alignment:
| Q |
118 |
aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggc |
196 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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|
| T |
40918643 |
aaacattgtcgaggag---aaaggaaaagagcaatatggaacgaatatctagccgtgag-cttgttcggattgggcggc |
40918717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2883075 - 2882954
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggaggagaagaagaagatg---atgagaacccacgcactttaaac |
97 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
2883075 |
gctaaaccctgagggcacgggacagctgtcaaggtgccaccatactgaaacctcgggaggagaagaagaagatgatgatgagaacccacgccctttaaac |
2882976 |
T |
|
| Q |
98 |
ctagtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2882975 |
ctagtaaaaaccttgcgagaaa |
2882954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3151486 - 3151601
Alignment:
| Q |
1 |
gctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatacctcgggaggagaagaagaagatgatgagaacccacgcactttaaaccta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
3151486 |
gctaaacccagagggcacgggacagctgtcaaggtgccaccatactgaaacctcgggagg---agaagaagatgatgagaacccacgccctttaaaccta |
3151582 |
T |
|
| Q |
101 |
gtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3151583 |
ataaaaaccttgcgagaaa |
3151601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 2873290 - 2873230
Alignment:
| Q |
59 |
ggagaagaagaagatgatgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
|||| |||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
2873290 |
ggaggagaagatgatgatgagaacccacaccctttaaacctagtaaaaaccttgcgagaaa |
2873230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 2882931 - 2882883
Alignment:
| Q |
118 |
aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctag |
169 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2882931 |
aaacattgtcgaggag---aaaggaaaatagcaatatggaacgaatatctag |
2882883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 1086736 - 1086644
Alignment:
| Q |
27 |
tgtcaaggtgccaccatactgatacctcgggaggagaagaagaagatgatgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
1086736 |
tgtcaaggtgccaccatactgaaaccactggaaaagaagatgaagatgatgagaacccacacacttgaaacctagtaaaaaccttgcgagaaa |
1086644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 52894426 - 52894385
Alignment:
| Q |
406 |
cttcttcttcggttgcacattaactgtttgattcaatgaatg |
447 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
52894426 |
cttcttcttcggttgcacataaactgtttgattaaatgaatg |
52894385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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