View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3028_low_7 (Length: 518)
Name: NF3028_low_7
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 230 - 496
Target Start/End: Complemental strand, 2290872 - 2290606
Alignment:
| Q |
230 |
cactatggaatacgaagagaaagcacccctatcagaaagaagcaaatgttgtatgtgtgatatctatgcattgcgaagtagtaagagatggcacatgcta |
329 |
Q |
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| T |
2290872 |
cactatggaatacgaagagaaagcacccctatcagaaagaagcaaatgttgtatgtgtgatatatatgcattgcgaattagtaagagatggcacatgcta |
2290773 |
T |
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| Q |
330 |
agaatgtgttggccctccacattaatagggactttggcgctaatttggtggattatagtcaccattnnnnnnntatattaactgaatgtcatgactttaa |
429 |
Q |
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| T |
2290772 |
agaatgtgttggccctccacattaatagggagtttggcgctaatttggtggattatggtcaccattaaaaaaaaatattaactgaatgtcatgagtttaa |
2290673 |
T |
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| Q |
430 |
attcaaccctaaaaaacacattagtgttgaattctcttgaaaaagagtttgatcatcttttacggtc |
496 |
Q |
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| T |
2290672 |
attcaaccctaaaaaacacattagtgttgaattctcttggaaaagagtttgatcatcttttacggtc |
2290606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 2290994 - 2290921
Alignment:
| Q |
152 |
aatatgtgttcttgatttcgtatttataaaacagtagggaagaaggaaaaacacatgaagagttaagaaggaag |
225 |
Q |
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| T |
2290994 |
aatatgtgttattgaattcgtatttataaaacagtagggaagaaggaaaaacacatgaagagttaagaaggaag |
2290921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 2291075 - 2291020
Alignment:
| Q |
100 |
cctttcaatctatccaagaccttggatgtagatgtaacaatataaaatccacaata |
155 |
Q |
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| T |
2291075 |
cctttcaatctatccaagaccttggatgtagatgtaacaatataaaatccaaaata |
2291020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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