View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3028_low_8 (Length: 434)
Name: NF3028_low_8
Description: NF3028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3028_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 55674864 - 55674459
Alignment:
| Q |
16 |
agaacgaacctattctcatatatactatgttgatttt-gtgatttctgaccacactcatctctatttataataagatacaattttcttatttaaatccta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55674864 |
agaacgaacctattctcatatatactatgttgatttttgtgatttctgaccacactcatctctatttataataagatacaattttcttatttaaatccta |
55674765 |
T |
|
| Q |
115 |
atttatgattctaatcctaatataaatatatggatttcattctaacactttctatatgcaatttattgtctcaatgatctttggaaaatacctttcttaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55674764 |
atttatgattctaatcctaatataaatatatggatat------aacactttctatatgcaatttattgtctcaatgatctttggaaaatacctttcttaa |
55674671 |
T |
|
| Q |
215 |
ctgaacttgtttggtttgttatttatcttaatttattttgttggcctcttaatgtagaacataattgattttcatgatagtaccaaaattgtatcatgca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
55674670 |
ctgaacttgtttggtttgttatttatcttaatttattttgttggcctcttaatgtagaacataattaattttcatgatagtagcaaaattgtatcatgca |
55674571 |
T |
|
| Q |
315 |
ctttagtttgcgaaagacaaaaataattctcactatcagtttatactgatctaattttggggtcatgataattaatttatcactgaaatatatttcatat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55674570 |
ctttagtttgcgaaagacaaaaataattctcactatcagtttatactgatctaattttggggtcatgataattaatttatcactgaaatatatttcatat |
55674471 |
T |
|
| Q |
415 |
cttgtgatgatg |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55674470 |
cttgtgatgatg |
55674459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 20699355 - 20699399
Alignment:
| Q |
107 |
aaatcctaatttatgattctaatcctaatataaatatatggattt |
151 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
20699355 |
aaatactaatctatgattctaatcctaataaatatatatggattt |
20699399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 19705206 - 19705263
Alignment:
| Q |
95 |
attttcttatttaaatcctaatttatgattctaatcctaat-ataaatatatggattt |
151 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
19705206 |
attttctaattcaaatcctaatttatgattctaatgctgataataaatatatggattt |
19705263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 43792661 - 43792711
Alignment:
| Q |
107 |
aaatcctaatttatgattctaatcctaat-ataaatatatggatttcattc |
156 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
43792661 |
aaatcctaatctatgattttaatcctaataataaatatatggatttgattc |
43792711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University