View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029-Insertion-1 (Length: 1136)

Name: NF3029-Insertion-1
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029-Insertion-1
NF3029-Insertion-1
[»] chr2 (4 HSPs)
chr2 (550-1053)||(21259995-21260499)
chr2 (548-738)||(21264574-21264764)
chr2 (60-114)||(33138630-33138684)
chr2 (940-1014)||(32225159-32225233)
[»] chr1 (26 HSPs)
chr1 (550-1053)||(47800566-47801071)
chr1 (548-734)||(47805146-47805332)
chr1 (191-381)||(35252418-35252603)
chr1 (270-381)||(35248709-35248816)
chr1 (191-321)||(35270766-35270896)
chr1 (45-117)||(35295864-35295936)
chr1 (42-116)||(35212051-35212125)
chr1 (35-117)||(35263089-35263171)
chr1 (35-117)||(35270514-35270596)
chr1 (45-112)||(8638989-8639056)
chr1 (47-114)||(35248360-35248427)
chr1 (47-117)||(35190453-35190523)
chr1 (45-114)||(35194581-35194650)
chr1 (45-114)||(35225001-35225070)
chr1 (191-244)||(35476668-35476721)
chr1 (42-98)||(34309434-34309490)
chr1 (45-117)||(35200020-35200092)
chr1 (191-322)||(35295569-35295700)
chr1 (191-233)||(35248618-35248660)
chr1 (63-117)||(35276640-35276694)
chr1 (42-111)||(35252161-35252230)
chr1 (271-375)||(35263421-35263519)
chr1 (60-115)||(35189414-35189469)
chr1 (79-117)||(35147477-35147515)
chr1 (328-366)||(35147807-35147845)
chr1 (63-113)||(35208239-35208289)
[»] chr3 (4 HSPs)
chr3 (549-1053)||(6843115-6843620)
chr3 (551-734)||(6847720-6847903)
chr3 (191-244)||(53924087-53924140)
chr3 (61-112)||(899766-899817)
[»] scaffold0043 (1 HSPs)
scaffold0043 (940-1024)||(55859-55944)
[»] chr7 (2 HSPs)
chr7 (191-291)||(38632208-38632308)
chr7 (191-377)||(38634944-38635131)


Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 550 - 1053
Target Start/End: Original strand, 21259995 - 21260499
Alignment:
Q  550 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21259995 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 21260094  T
Q  650 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatcagag 749  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21260095 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgacatggtatcagag 21260194  T
Q  750 ctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 849  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260195 cttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 21260294  T
Q  850 tcctagctgaattgacggcggaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatagcggtgggtggcacca 949  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  21260295 tcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcata-cggt-ggtggcacca 21260392  T
Q  950 atcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctca-gcaaagac-agctgggttatatc-atggagatc 1046  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  21260393 atcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatc 21260492  T
Q  1047 ttcctca 1053  Q
    |||||||    
T  21260493 ttcctca 21260499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 548 - 738
Target Start/End: Original strand, 21264574 - 21264764
Alignment:
Q  548 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264574 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 21264673  T
Q  648 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgaca 738  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  21264674 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca 21264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 33138684 - 33138630
Alignment:
Q  60 gcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 114  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||| |||||||||    
T  33138684 gcttgaattgaagaattttcccatctcaatctccaaccacccatcacttctcaca 33138630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 940 - 1014
Target Start/End: Complemental strand, 32225233 - 32225159
Alignment:
Q  940 ggtggcaccaatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctc 1014  Q
    |||||| ||||| ||||||||||| || |||| |||||| || |||| |||  |||| |||||||||||||||||    
T  32225233 ggtggcgccaattggcatcaaattggatggcaacaactatcccctttagtcttaggtggtcgagatgtatatctc 32225159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 550 - 1053
Target Start/End: Original strand, 47800566 - 47801071
Alignment:
Q  550 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  47800566 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaatagg 47800665  T
Q  650 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatc-aga 748  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||    
T  47800666 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaaga 47800765  T
Q  749 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 848  Q
    ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800766 gcttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 47800865  T
Q  849 atcctagctgaattgacggcggaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatagcggtgggtggcacc 948  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  47800866 atcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttagttctgatcata-cggt-ggtggcacc 47800963  T
Q  949 aatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctca-gcaaagac-agctgggttatatc-atggagat 1045  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  47800964 aatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagat 47801063  T
Q  1046 cttcctca 1053  Q
    ||||||||    
T  47801064 cttcctca 47801071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 548 - 734
Target Start/End: Original strand, 47805146 - 47805332
Alignment:
Q  548 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805146 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 47805245  T
Q  648 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagttt 734  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  47805246 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 47805332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 191 - 381
Target Start/End: Original strand, 35252418 - 35252603
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||| |||||| || | |||||   ||||||    |||||||  ||||||| |||    
T  35252418 catactgagtatttggggacaaggcaatggtgtttatcataccacaaatgtcaatcccacaaacatcgtcaagctcggcaacttcaggaaacctatacaa 35252517  T
Q  291 aagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgacaaatggagtatct 381  Q
    |||| ||||| ||||| ||||||||||| |||    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  35252518 aagtagtaca-aaaagatgcaaagattataat----ataggaactgggagaaaagttgaaagtgattcattaaatgacaaatggagaatct 35252603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 35248709 - 35248816
Alignment:
Q  270 gacttcagtgaacctatccaaaagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgaca 369  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||     |||||||||||| |||||||||||||||||| ||||||| ||||||    
T  35248709 gacttcagtgaacctatccaaaagtagtacaaaaaagttgcaaagatta----taatataggaactgggagaaaagttgaaagtggttcattaaatgaca 35248804  T
Q  370 aatggagtatct 381  Q
    ||||||||||||    
T  35248805 aatggagtatct 35248816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 35270766 - 35270896
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 290  Q
    |||| |||||||||||||||| | | ||||||||||||| ||| |||||||||| |  | ||||||||  ||||| |  |||||||| |||||| |||||    
T  35270766 catattgagtatttggggacaggacgatggtgtttatcacaccatgaatttcaagccaacacacatcaacaagcttagcgacttcagggaacctgtccaa 35270865  T
Q  291 aagtggtacacaaaagttgcaaagattagaa 321  Q
    |||| ||||||| ||| ||||||||||||||    
T  35270866 aagtagtacacagaagatgcaaagattagaa 35270896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 35295936 - 35295864
Alignment:
Q  45 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35295936 ttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacacta 35295864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 35212051 - 35212125
Alignment:
Q  42 gatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacact 116  Q
    ||||||||||||||| | ||| |||||||||||||  |||||||||||||| ||||||| ||| |||||||||||    
T  35212051 gatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatcacttctcacact 35212125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 35263089 - 35263171
Alignment:
Q  35 tcatctagatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||| || |||||||| ||||| || |||| |||||||||  |||||||||||||| ||||||| ||||||||||||||||    
T  35263089 tcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacacta 35263171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 35270514 - 35270596
Alignment:
Q  35 tcatctagatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||| || |||||||| ||||| || ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35270514 tcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacacta 35270596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 8638989 - 8639056
Alignment:
Q  45 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctca 112  Q
    ||||||||||||||||| ||||||||||||||  ||||||||| |||| ||||||| ||| |||||||    
T  8638989 ttcttcatcttctaagcctgaattgaagaactctcccatctcagtctccaaccacccatcacttctca 8639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 35248360 - 35248427
Alignment:
Q  47 cttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 114  Q
    |||||| ||||| || | ||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  35248360 cttcattttctaggcctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcaca 35248427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 35190453 - 35190523
Alignment:
Q  47 cttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||||||||| || ||||||||||||||  || ||||||||||| ||||||| ||| ||||||||||||    
T  35190453 cttcatcttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacacta 35190523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 35194581 - 35194650
Alignment:
Q  45 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 114  Q
    |||||||||||| | ||||| |||||||||||  ||||| |||||||| ||||||| |||||||||||||    
T  35194581 ttcttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 35225001 - 35225070
Alignment:
Q  45 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 114  Q
    |||||||||||||| || |||| |||||||||  |||||||||||||| ||||| | |||||||||||||    
T  35225001 ttcttcatcttctaggcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcaca 35225070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 35476668 - 35476721
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaa 244  Q
    |||||||||||||||||||||||||| ||||||||||| | || ||||||||||    
T  35476668 catactgagtatttggggacaaggcattggtgtttatctttccatgaatttcaa 35476721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 34309434 - 34309490
Alignment:
Q  42 gatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaacca 98  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||||||| |||||    
T  34309434 gatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaacca 34309490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 35200020 - 35200092
Alignment:
Q  45 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||||||||||  || ||||||||||||||  || || |||||||| ||||||| ||||||||||||||||    
T  35200020 ttcttcatcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacacta 35200092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 35295700 - 35295569
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 290  Q
    |||| |||||||||||||||||||||  |||||||||||| ||  ||||||||| |   | |||| |||||||||||   ||||| | |||||| |||||    
T  35295700 catattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaa 35295601  T
Q  291 aagtggtacacaaaagttgcaaagattagaat 322  Q
    || | ||   |||||||||||||||| |||||    
T  35295600 aatttgtgtgcaaaagttgcaaagataagaat 35295569  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 35248618 - 35248660
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcatacc 233  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  35248618 catactgagtatttggggacaagtcaatggtgtttatcctacc 35248660  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 35276640 - 35276694
Alignment:
Q  63 tgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35276640 tgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacacta 35276694  T

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Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 35252161 - 35252230
Alignment:
Q  42 gatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctc 111  Q
    ||||||||||| ||||| || | ||||||||||||  || ||||||||||||||||||| ||| ||||||    
T  35252161 gatttcttcatattctatgcctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 35263421 - 35263519
Alignment:
Q  271 acttcagtgaacctatccaaaagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgacaa 370  Q
    ||||||| |||||| | ||||||| ||||||||||| |||||||||||    ||| |||  ||||  ||||||||||||||||| || |||||||||||     
T  35263421 acttcagggaacctgttcaaaagtagtacacaaaagatgcaaagatta----gaacataataact--gagaaaagttgaaagtgttttattacatgacag 35263514  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 35189414 - 35189469
Alignment:
Q  60 gcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacac 115  Q
    |||||||||||||||||  |||||  ||||||| ||||||||||| ||||||||||    
T  35189414 gcttgaattgaagaactcccccattccaatctccaaccacctatcacttctcacac 35189469  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 35147477 - 35147515
Alignment:
Q  79 cccatctcaatctcaaaccacctatcgcttctcacacta 117  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  35147477 cccatctcaatctccaaccacccatcgcttctcacacta 35147515  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 35147807 - 35147845
Alignment:
Q  328 taggaactaggagaaaagttgaaagtgattcattacatg 366  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  35147807 taggaactaagagaaaagctgaaagtgattcattacatg 35147845  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 35208239 - 35208289
Alignment:
Q  63 tgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcac 113  Q
    ||||||||||||||  || ||||||||||| ||||||| ||||||||||||    
T  35208239 tgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcac 35208289  T

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Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 549 - 1053
Target Start/End: Original strand, 6843115 - 6843620
Alignment:
Q  549 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843115 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 6843214  T
Q  649 gtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatcaga 748  Q
     ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  6843215 attttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaga 6843314  T
Q  749 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 848  Q
    ||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6843315 gcttctgatccaaaacctaatataattctgaaaccctaaaaatccacctccttccatggccgactctgattctaatatggaagacacatcatcgtcctcc 6843414  T
Q  849 atcctagctgaattgacggcggaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatagcggtgggtggcacc 948  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  6843415 atcctagctgaattgacggcgaaaatgacggaagttttgaaccaagctgcagccccgtcacaagttaatgttaattttgatcata-cggt-ggtggcacc 6843512  T
Q  949 aatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctca-gcaaagac-agctgggttatatc-atggagat 1045  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||    
T  6843513 aatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcacagacaagctgggttatatcaatggagat 6843612  T
Q  1046 cttcctca 1053  Q
    ||||||||    
T  6843613 cttcctca 6843620  T

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Target: chr3; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 551 - 734
Target Start/End: Original strand, 6847720 - 6847903
Alignment:
Q  551 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6847720 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 6847819  T
Q  651 ttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagttt 734  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  6847820 tttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 6847903  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 53924140 - 53924087
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaa 244  Q
    ||||| ||||||||||||||||| ||| |||||||||||| ||||||| |||||    
T  53924140 cataccgagtatttggggacaagacaagggtgtttatcattccttgaaattcaa 53924087  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 899817 - 899766
Alignment:
Q  61 cttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctca 112  Q
    ||||||||||| ||||  |||||||||||||| ||||||| |||||||||||    
T  899817 cttgaattgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

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Target: scaffold0043 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 940 - 1024
Target Start/End: Original strand, 55859 - 55944
Alignment:
Q  940 ggtggcaccaatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctca-gcaaagaca 1024  Q
    |||||| || || ||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||||| |||||||||    
T  55859 ggtggcgccgattggcatcaaattggatggcagcaactatcccctttggtcccaggtggttgagatgtatatctcaggcaaagaca 55944  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 38632208 - 38632308
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 290  Q
    |||||||||||||| | ||||||||||  |||| |||| | ||  ||||||||| |  |||||||||||||||||||   ||||||| |||||| |||||    
T  38632208 catactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 38632307  T
Q  291 a 291  Q
    |    
T  38632308 a 38632308  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 377
Target Start/End: Original strand, 38634944 - 38635131
Alignment:
Q  191 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 290  Q
    |||||||||||||| ||||||||  ||  ||||||||  | ||  ||||||||| |  |||| ||| ||||| |||||  ||||||| |||||| |||||    
T  38634944 catactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaa 38635043  T
Q  291 aagtggtacacaaaagttgcaaagattaga-atgaatataggaactaggagaaaagttgaaagtgattcattacatgacaaatggagt 377  Q
    || | || |||||||||||||| |||  || |||| || | |||||  || ||||||||||||| ||||||   || |||||||||||    
T  38635044 aatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttgaaagtaattcataggatcacaaatggagt 38635131  T

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