View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029-Insertion-10 (Length: 368)
Name: NF3029-Insertion-10
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 26574881 - 26574521
Alignment:
| Q |
7 |
agttcggccaaggggtaagtaaagtccggccaaagtttgtttctatcaggattccaacaggggatatacaaagtccttagagaatatgttaatataaaca |
106 |
Q |
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| T |
26574881 |
agttcggccaaggggtaagtaaagtccggccaaagtttgtttctatcaggattccaacaggggatatacaaagtccttagagaatatgttaatataaaca |
26574782 |
T |
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| Q |
107 |
ctaaccttgtccaattcttgatatgcagttgtaacttaggtcaagtactctcagccaagtcaattctttgaggccctcaatggtgctaatcttgtttctt |
206 |
Q |
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| T |
26574781 |
ctaaccttgtccaattcttgatatgcagttgtaacttaggtcaagtactctcagccgagtcaattctttgaggccctcaatggtgctaatcttgtttctt |
26574682 |
T |
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| Q |
207 |
gacaaattaagtgtttgaacactctttggtagacatcctggtgagattgtaactgcagaacaataataaagaaagtgagtcaataaatttgagttagatt |
306 |
Q |
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| T |
26574681 |
gacaaattaagtgtttgaacactctttggtagacatcctggtgagattgtaactgcagaacaataataaagaaagtgagtcaataaa-ttgagttagatt |
26574583 |
T |
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| Q |
307 |
agttgttaatttatgctgtactagggctaaattatattctacttgtgaagttatacctatga |
368 |
Q |
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| T |
26574582 |
agttgttaatttatgctgtactaaggctaaattatattctacttgtgaagttatacctatga |
26574521 |
T |
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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 270
Target Start/End: Complemental strand, 33765480 - 33765316
Alignment:
| Q |
106 |
actaaccttgtccaattcttgatatgcagttgtaacttaggtcaagtactctcagccaagtcaattctttgaggccctcaatggtgctaatcttgtttct |
205 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||||||||||||| | || | || |||||| |||||||||||| ||||| ||||||||||| |
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| T |
33765480 |
actaaccttgtccaattcttgaaatgcggttataacttaggtcaagtacccgcaatcgggttaattctcggaggccctcaatagtgctgatcttgtttct |
33765381 |
T |
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| Q |
206 |
tgacaaattaagtgtttgaacactctttggtagacatcctggtgagattgtaactgcagaacaat |
270 |
Q |
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||||||||||||||| |||| || |||||| ||| |||| |||| ||| ||||||| |||||| |
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| T |
33765380 |
tgacaaattaagtgtatgaagaccctttgggagaaatccaggtgtgatatgaactgcaaaacaat |
33765316 |
T |
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