View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3029-Insertion-4 (Length: 760)
Name: NF3029-Insertion-4
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029-Insertion-4 |
 | |
|
| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 8 - 760
Target Start/End: Original strand, 35106791 - 35107571
Alignment:
| Q |
8 |
ccttttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
107 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106791 |
cctttcaccaattcttcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
35106890 |
T |
|
| Q |
108 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35106891 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaactttgaaaa |
35106990 |
T |
|
| Q |
208 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106991 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
35107090 |
T |
|
| Q |
308 |
gctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt-aactcaggaca |
406 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
35107091 |
gctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaaca |
35107190 |
T |
|
| Q |
407 |
agctttgttactcgtcttttgt----------------------ttgttttgtaatgcttactttgtttgtgatgtctgtgcaagaaat-----ctatga |
479 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | | |
|
|
| T |
35107191 |
agctttgttactcgtcttttgtttaattcgtgtgctttttttggttgttttgtaatgcttactttgtttgtgatgtctgtgcaaggaatacttggtgtta |
35107290 |
T |
|
| Q |
480 |
tgatgtaatatgtgagatgttaatccataaatgaataagtaaacagttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtg |
579 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35107291 |
taatgtaatatgtgagatgttaatccataaatgaataagtaaacagttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtg |
35107390 |
T |
|
| Q |
580 |
ttatacatagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggcagatgacattggtactgtaactaattgtcattaa |
679 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35107391 |
ttatacttagttggccttatactttgtaaaccattttcaagacagacttttaatgagctcaatggcagatgaaattggtactgtaactgattgtcattaa |
35107490 |
T |
|
| Q |
680 |
aattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggcttcgactatagcagcttt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35107491 |
aattatgtattcctcgctttgtttcatatgagagtttgaaagtacgtttctcagccaaatggctttgactatagcagcttt |
35107571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 35073069 - 35072682
Alignment:
| Q |
8 |
ccttttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
107 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35073069 |
cctttcaccaattcttcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
35072970 |
T |
|
| Q |
108 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35072969 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaa |
35072870 |
T |
|
| Q |
208 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35072869 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatcaagtgaaa |
35072770 |
T |
|
| Q |
308 |
gctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || ||||| | ||||| ||||| | || |||| ||||||||||||| |
|
|
| T |
35072769 |
gctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt |
35072682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 35097623 - 35098000
Alignment:
| Q |
15 |
ccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcac-caggattgattggaaggagaccccagaagctcatgtgttca |
113 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||||||||| |||| ||||| || | | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
35097623 |
ccaattcttcactttctgcttc---attccctcgtgagaattctgcatttgcaagcacacaag-tggattggaaggagaccccagaagcacatgtgttcg |
35097718 |
T |
|
| Q |
114 |
aggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
35097719 |
aggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaaga |
35097818 |
T |
|
| Q |
214 |
taagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgca |
313 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
35097819 |
taagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgca |
35097918 |
T |
|
| Q |
314 |
atggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
395 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
35097919 |
atggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt |
35098000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 36296835 - 36296508
Alignment:
| Q |
15 |
ccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
36296835 |
ccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacacgtgtttaa |
36296736 |
T |
|
| Q |
115 |
ggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagat |
214 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||||||||| |||||||| |
|
|
| T |
36296735 |
agctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggagagaggaacgttgagaaagaagac |
36296636 |
T |
|
| Q |
215 |
aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa |
314 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||||||| ||||||||||||| |
|
|
| T |
36296635 |
aagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaa |
36296536 |
T |
|
| Q |
315 |
tggagaatggtgttctcactgtcactgt |
342 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
36296535 |
tggagaatggtgttctcactgtaactgt |
36296508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 143 - 395
Target Start/End: Original strand, 35098037 - 35098289
Alignment:
| Q |
143 |
gaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagc |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35098037 |
gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagc |
35098136 |
T |
|
| Q |
243 |
gtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgt |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35098137 |
gtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgt |
35098236 |
T |
|
| Q |
343 |
ccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
395 |
Q |
| |
|
|| || |||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
35098237 |
tccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt |
35098289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 36940765 - 36940478
Alignment:
| Q |
107 |
gtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaa |
206 |
Q |
| |
|
|||||||| |||||| |||| ||| ||||||||||||||| ||| || || ||||||||||||||||||||||||||||| || | || | |||||| | |
|
|
| T |
36940765 |
gtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgatagggttcttcagataagtggaaaaagaagcgttgaga |
36940666 |
T |
|
| Q |
207 |
aagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaa |
306 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||||| |||| |
|
|
| T |
36940665 |
aagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatcaaatgaa |
36940566 |
T |
|
| Q |
307 |
agctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt |
394 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| | |||| | ||| ||||||| ||||||||| |
|
|
| T |
36940565 |
agctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt |
36940478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 148 - 354
Target Start/End: Original strand, 36961300 - 36961507
Alignment:
| Q |
148 |
gaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagc |
247 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||| ||||| ||||| | |||||| |||||||||||||| || |||||||| | ||||||| |||| |
|
|
| T |
36961300 |
gaaggtagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagc |
36961399 |
T |
|
| Q |
248 |
agtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc-tgcaatggagaatggtgttctcactgtcactgtccct |
346 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||| || |||||||| ||||| || || ||||||||||||||||||||| ||| | ||| |
|
|
| T |
36961400 |
agtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaatgcaaacatgggagaatggtgttctcactgtaactattcct |
36961499 |
T |
|
| Q |
347 |
aaggaaga |
354 |
Q |
| |
|
|||||||| |
|
|
| T |
36961500 |
aaggaaga |
36961507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 36936094 - 36935979
Alignment:
| Q |
80 |
gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
36936094 |
gattggaaggagaccccagaagtagatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttc |
36935995 |
T |
|
| Q |
180 |
agataagcggtgagag |
195 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
36935994 |
agataagcggagagag |
36935979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
| Q |
281 |
gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc |
379 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || || | |||||| | |||||||||||| | || || |
|
|
| T |
36935974 |
gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc |
36935875 |
T |
|
| Q |
380 |
attgaaatctctggtta |
396 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
36935874 |
attgatatctctggtta |
36935858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 76 - 272
Target Start/End: Complemental strand, 35072161 - 35071965
Alignment:
| Q |
76 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
175 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |
|
|
| T |
35072161 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
35072062 |
T |
|
| Q |
176 |
cttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
272 |
Q |
| |
|
|||||||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
35072061 |
cttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
35071965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 24041125 - 24040736
Alignment:
| Q |
8 |
ccttttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
24041125 |
cctttaaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgcgagcaccaggatcgattggaaggagaccccagaagcacatg |
24041026 |
T |
|
| Q |
108 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24041025 |
tgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaa |
24040926 |
T |
|
| Q |
208 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24040925 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
24040826 |
T |
|
| Q |
308 |
gctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggttaa |
397 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| || | || ||||||| |||||||||||| |
|
|
| T |
24040825 |
gctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatctctggttaa |
24040736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 24014568 - 24014181
Alignment:
| Q |
8 |
ccttttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatg |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24014568 |
cctttaaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacatg |
24014469 |
T |
|
| Q |
108 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| || |
|
|
| T |
24014468 |
tgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaa |
24014369 |
T |
|
| Q |
208 |
agaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaa |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || |||||||||||||||||||||||| |
|
|
| T |
24014368 |
agaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaa |
24014269 |
T |
|
| Q |
308 |
gctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || ||||| | ||||| ||||| | || |||| ||||||||||||| |
|
|
| T |
24014268 |
gctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt |
24014181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 3123032 - 3123225
Alignment:
| Q |
36 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
135 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || | || || ||||| || | |||||| ||||||||||| ||||||||||| || |||| |
|
|
| T |
3123032 |
cttcattccctggtgagaattccgcatttgtgagcacaagagtggactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaa |
3123131 |
T |
|
| Q |
136 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatgg |
229 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||| |||||||| ||||| |||| |||| |
|
|
| T |
3123132 |
gaaggaagaggtgaaggttgaaattgaagatgataaggttcttcagataagcggagaaaggaccgttgagaaagaagacaagaacgatcgatgg |
3123225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 97 - 354
Target Start/End: Original strand, 34918978 - 34919235
Alignment:
| Q |
97 |
agaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagagg |
196 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| ||||||| || |||||||| |||||||| ||||||| | || | |||||||| |||||||| |
|
|
| T |
34918978 |
agaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgcagataagtggtgagaga |
34919077 |
T |
|
| Q |
197 |
aacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatgg |
296 |
Q |
| |
|
||| || | ||||| ||| ||||| | ||||||||||| ||| | || ||| || || |||||||||||||| || || ||||||| ||||||| |
|
|
| T |
34919078 |
aacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatgg |
34919177 |
T |
|
| Q |
297 |
atcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga |
354 |
Q |
| |
|
|||| || ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |
|
|
| T |
34919178 |
atcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 369
Target Start/End: Original strand, 26578990 - 26579249
Alignment:
| Q |
110 |
ttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaag |
209 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||||||||| |||||||| ||| | ||| | ||||||| || |||||||| |||| || | |
|
|
| T |
26578990 |
ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaagg |
26579089 |
T |
|
| Q |
210 |
aagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc |
309 |
Q |
| |
|
|||| ||||||||| |||||||| || || || ||| |||| || | || ||||||| || || |||||||| || ||||| | |||||||| |
|
|
| T |
26579090 |
aagacaagaatgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagc |
26579189 |
T |
|
| Q |
310 |
tgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctga |
369 |
Q |
| |
|
|| |||||||||||||| || ||||| | ||| ||||||| ||| | ||||||||||| |
|
|
| T |
26579190 |
tgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctga |
26579249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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