View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029-Insertion-5 (Length: 555)

Name: NF3029-Insertion-5
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029-Insertion-5
NF3029-Insertion-5
[»] chr1 (13 HSPs)
chr1 (8-555)||(52516811-52517358)
chr1 (243-328)||(30882449-30882533)
chr1 (258-323)||(7347692-7347757)
chr1 (261-322)||(17473138-17473199)
chr1 (259-328)||(37143292-37143361)
chr1 (241-287)||(26238438-26238482)
chr1 (262-324)||(6025971-6026033)
chr1 (259-289)||(25634566-25634596)
chr1 (259-309)||(46331107-46331157)
chr1 (239-324)||(46937568-46937653)
chr1 (257-317)||(1880078-1880137)
chr1 (261-293)||(26161605-26161637)
chr1 (263-323)||(51203656-51203715)
[»] chr6 (12 HSPs)
chr6 (261-337)||(2732921-2732997)
chr6 (260-335)||(2457203-2457278)
chr6 (260-322)||(1912505-1912567)
chr6 (266-336)||(31322632-31322702)
chr6 (260-297)||(33735434-33735471)
chr6 (242-289)||(18270596-18270643)
chr6 (262-324)||(264553-264615)
chr6 (258-328)||(2458287-2458357)
chr6 (262-296)||(5730194-5730228)
chr6 (259-324)||(3736990-3737055)
chr6 (259-323)||(26494407-26494471)
chr6 (259-295)||(29961267-29961303)
[»] chr7 (11 HSPs)
chr7 (259-335)||(2219523-2219599)
chr7 (253-326)||(7245941-7246014)
chr7 (262-297)||(32888961-32888996)
chr7 (261-322)||(1110408-1110469)
chr7 (261-290)||(5260422-5260451)
chr7 (263-336)||(6894313-6894386)
chr7 (258-311)||(21451521-21451574)
chr7 (262-295)||(30885321-30885354)
chr7 (292-328)||(7982371-7982407)
chr7 (263-323)||(23747322-23747382)
chr7 (259-323)||(32231761-32231825)
[»] chr4 (17 HSPs)
chr4 (263-330)||(27722414-27722481)
chr4 (261-332)||(1202394-1202464)
chr4 (269-323)||(9318705-9318759)
chr4 (228-289)||(18968308-18968367)
chr4 (261-337)||(2562467-2562543)
chr4 (262-329)||(13298522-13298589)
chr4 (258-297)||(34581604-34581643)
chr4 (259-289)||(19237629-19237659)
chr4 (258-328)||(27121489-27121559)
chr4 (254-324)||(30617262-30617331)
chr4 (262-295)||(207498-207531)
chr4 (262-323)||(415144-415205)
chr4 (244-288)||(46891314-46891356)
chr4 (263-307)||(1045848-1045892)
chr4 (258-290)||(26275537-26275569)
chr4 (264-312)||(31675044-31675092)
chr4 (296-336)||(39064895-39064935)
[»] chr5 (10 HSPs)
chr5 (258-336)||(11257714-11257792)
chr5 (249-289)||(27725540-27725580)
chr5 (247-322)||(41014989-41015064)
chr5 (263-301)||(29466203-29466240)
chr5 (254-328)||(39258556-39258630)
chr5 (258-295)||(631488-631525)
chr5 (258-294)||(9446300-9446336)
chr5 (247-303)||(17755219-17755275)
chr5 (264-324)||(20981268-20981328)
chr5 (257-289)||(41399566-41399598)
[»] chr3 (10 HSPs)
chr3 (257-307)||(27016920-27016970)
chr3 (262-323)||(162902-162963)
chr3 (241-289)||(21754271-21754319)
chr3 (260-295)||(14794293-14794328)
chr3 (261-294)||(53855744-53855777)
chr3 (239-308)||(54842174-54842243)
chr3 (239-295)||(2990960-2991016)
chr3 (277-337)||(16169188-16169248)
chr3 (262-294)||(38884077-38884109)
chr3 (276-320)||(48198079-48198123)
[»] chr8 (14 HSPs)
chr8 (248-303)||(10987788-10987843)
chr8 (254-301)||(13869837-13869884)
chr8 (258-329)||(27483044-27483115)
chr8 (270-329)||(34297884-34297943)
chr8 (259-308)||(12361983-12362032)
chr8 (254-334)||(13851001-13851079)
chr8 (259-323)||(8282847-8282911)
chr8 (258-294)||(33120557-33120593)
chr8 (247-290)||(18899974-18900017)
chr8 (259-329)||(44806251-44806321)
chr8 (258-323)||(1310129-1310194)
chr8 (261-294)||(4050471-4050504)
chr8 (261-294)||(45371098-45371131)
chr8 (239-295)||(9112445-9112501)
[»] chr2 (7 HSPs)
chr2 (262-321)||(41631885-41631944)
chr2 (252-329)||(29378502-29378579)
chr2 (236-291)||(10030155-10030210)
chr2 (236-291)||(10052068-10052123)
chr2 (258-329)||(24011834-24011905)
chr2 (262-329)||(28044715-28044782)
chr2 (262-328)||(29415748-29415814)


Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 52516811 - 52517358
Alignment:
Q  8 ctacttaaccatatatgtaccatatatctagattgaaaactattgaacgattagagaaatggaatcagataggataaaatcaaatgaaaattaagtaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52516811 ctacttaaccatatatgtaccatatatctagattgaaaactattgaacgattagagaaatggaatcagataggataaaatcaaatgaaaattaagtaaaa 52516910  T
Q  108 tccctattccattgtttgattgtttcattggggaactaggtttccatttcattatttgagaatcaaaatggtgggtaagtcaattttatcaatcgtgtat 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52516911 tccctattccattgtttgattgtttcattgaggaactaggtttccatttcattatttgagaatcaaaatggtgggtaagtcaattttatcaatcgtgtat 52517010  T
Q  208 caagaaaaatagcaggttaatcaaattactatatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52517011 caagaaaaatagcaggttaatcaaattactatatgcaatagtgctatattgccgctatttgacaatattttgtactaaataacatatcacaaaataatag 52517110  T
Q  308 caattagttcaaattccactactctatagtattgtagtgccgatgtagccactaattaacaacagtagggtaggggtaagctatatttattaattaactt 407  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517111 caattagttcaaattccactactctatagtgttgtagtgccgacgtagccactaattaacaacagtagggtaggggtaagctatatttattaattaactt 52517210  T
Q  408 caatagaaatttagaatagttcaccccccaatatcccgacaggttaaaaactatagatatggggtggaaatggatagaacttttaagatttcataacctc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517211 caatagaaatttagaatagttcaccccccaatatcccgacaggttaaaaactatagatatggggtggaaatggatagaacttttaagatttcataacctc 52517310  T
Q  508 acatcctatttcagacagtccaaacaattgcaactacaatttgctccc 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517311 acatcctatttcagacagtccaaacaattgcaactacaatttgctccc 52517358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 30882533 - 30882449
Alignment:
Q  243 caatagtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    ||||| ||||||||||||||||||||||   |||||||||| ||||||||||| ||||| |||||  ||| |||||||||||||||    
T  30882533 caataatgctatattgccgctatttgacgtcattttgtact-aatagcatatcgcaaaacaatagtgatttgttcaaattccacta 30882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 7347757 - 7347692
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||||||||| |||||||||||||||||||||  |||  ||||| |||||||||| ||||||||||    
T  7347757 gccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattc 7347692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 17473199 - 17473138
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaatt 322  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||| || ||| |||||    
T  17473199 gctatttgacaatattttgtactaaatagcatattgcaaaacaatagcattttgtttaaatt 17473138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 37143292 - 37143361
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    |||||||||| ||||||||||||||||||||  ||||||  |||||||| |||| ||||||| |||||||    
T  37143292 ccgctatttggcaatattttgtactaaatagtgtatcacgcaataatagtaatttgttcaaagtccacta 37143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 26238438 - 26238482
Alignment:
Q  241 tgcaatagtgctatattgccgctatttgacaatattttgtactaaat 287  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||    
T  26238438 tgcaatagtgctata--gccgctatttggcaatattttgtactaaat 26238482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 6025971 - 6026033
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||||||| |||||||||||||||||||||| |  || |||| | ||| |||||||||||    
T  6025971 ctatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcc 6026033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 289
Target Start/End: Original strand, 25634566 - 25634596
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatag 289  Q
    |||||||||||||||||||||||||||||||    
T  25634566 ccgctatttgacaatattttgtactaaatag 25634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 46331107 - 46331157
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagca 309  Q
    |||||||||||||  |||||||||| |||||||||||| |||| |||||||    
T  46331107 ccgctatttgacaccattttgtacttaatagcatatcataaaacaatagca 46331157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 46937653 - 46937568
Alignment:
Q  239 tatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||| |||| ||||  ||| |||||| ||||||||||||||||||||||  ||| |  || ||||||| || |||||||||||    
T  46937653 tatgcaacagtgttatagcgccactatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattcc 46937568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 1880078 - 1880137
Alignment:
Q  257 tgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttc 317  Q
    |||||||||||||||| |||||||||| |||||  ||||||| || |||||||||| ||||    
T  1880078 tgccgctatttgacaacattttgtact-aatagagtatcacataacaatagcaatttgttc 1880137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 26161605 - 26161637
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcata 293  Q
    |||||||||||||| ||||||||||||||||||    
T  26161605 gctatttgacaatactttgtactaaatagcata 26161637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 51203715 - 51203656
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||||||||||| ||||| ||||||| ||||  |||||| | |||||||||||||||||||    
T  51203715 tatttgacaatactttgtgctaaataacatag-acaaaacattagcaattagttcaaattc 51203656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 2732997 - 2732921
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatagt 337  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||| |||||||    
T  2732997 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 2732921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 2457278 - 2457203
Alignment:
Q  260 cgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctata 335  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||   ||  ||||||||||||||| |||||    
T  2457278 cgctgtttgacaacattttgtactaaatagcatatcacaaaacaatagtcgttttttcaaattccactacactata 2457203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 1912505 - 1912567
Alignment:
Q  260 cgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaatt 322  Q
    ||||||||||||||| |||||||||||||| ||||| || || |||||| ||| |||||||||    
T  1912505 cgctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttcaaatt 1912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 31322702 - 31322632
Alignment:
Q  266 ttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatag 336  Q
    ||||||| ||||||||  ||||||  ||||||| ||||||| ||||| |||||||||||||||| ||||||    
T  31322702 ttgacaacattttgtaagaaatagtgtatcacagaataataacaatttgttcaaattccactacgctatag 31322632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 33735434 - 33735471
Alignment:
Q  260 cgctatttgacaatattttgtactaaatagcatatcac 297  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  33735434 cgctatttgacaacattttgtactaaatagcatatcac 33735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 18270596 - 18270643
Alignment:
Q  242 gcaatagtgctatattgccgctatttgacaatattttgtactaaatag 289  Q
    |||| ||||||||| ||||||||||| ||||||||||||| |||||||    
T  18270596 gcaacagtgctatagtgccgctatttcacaatattttgtattaaatag 18270643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 264615 - 264553
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||||||| | ||||||||||||||| || |||| || |||| ||||| |||||||||||    
T  264615 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 264553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 2458357 - 2458287
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    |||||||| |||||||||||| |||| |||||||||||||   | ||||| |||| |||||| ||||||||    
T  2458357 gccgctatctgacaatattttatactgaatagcatatcacgggacaatagtaatttgttcaatttccacta 2458287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 5730194 - 5730228
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatca 296  Q
    ||||||||||| |||||||||||||||||||||||    
T  5730194 ctatttgacaagattttgtactaaatagcatatca 5730228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 3737055 - 3736990
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||| ||| |||| |||||||| ||||||||||| || || |||| ||||| |||||||||||    
T  3737055 ccgctatatgataatagtttgtactgaatagcatatcgcagaacaataacaatttgttcaaattcc 3736990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 26494471 - 26494407
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||| ||||||||| | |||||||||||||||  ||  || || |||||||||||||||||||||    
T  26494471 ccgcaatttgacaacagtttgtactaaatagcgaattgcagaacaatagcaattagttcaaattc 26494407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 29961267 - 29961303
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatc 295  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  29961267 ccgctatttgacaatatattgtactgaatagcatatc 29961303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 2219523 - 2219599
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctata 335  Q
    |||||||||||||||||||||||||||||||||||||| | || |||| | ||  |||||||||| ||||| |||||    
T  2219523 ccgctatttgacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattctactacactata 2219599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 7245941 - 7246014
Alignment:
Q  253 atattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccac 326  Q
    |||| ||||||||||||||| | ||||||||||||||| |||| ||||| |||||| ||| ||| |||||||||    
T  7245941 atatagccgctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtttaaattccac 7246014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 32888996 - 32888961
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcac 297  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32888996 ctatttgacaatactttgtactaaatagcatatcac 32888961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 1110408 - 1110469
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaatt 322  Q
    |||||||||||| | || | ||||||||||||||| | ||| |||||||||| |||||||||    
T  1110408 gctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatt 1110469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 5260451 - 5260422
Alignment:
Q  261 gctatttgacaatattttgtactaaatagc 290  Q
    ||||||||||||||||||||||||||||||    
T  5260451 gctatttgacaatattttgtactaaatagc 5260422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 6894313 - 6894386
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatag 336  Q
    |||||||||| |||||||||| |||||  |||    ||| |||||||||| |||||||||||||||| ||||||    
T  6894313 tatttgacaacattttgtacttaatagtgtattgttaaacaatagcaatttgttcaaattccactacgctatag 6894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 21451521 - 21451574
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaat 311  Q
    ||||||||||||||| |||||||||||||| || |||| || || |||||||||    
T  21451521 gccgctatttgacaagattttgtactaaattgcgtatcgcagaacaatagcaat 21451574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 30885321 - 30885354
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatc 295  Q
    |||||||||||| |||||||||||||||||||||    
T  30885321 ctatttgacaatgttttgtactaaatagcatatc 30885354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 7982371 - 7982407
Alignment:
Q  292 tatcacaaaataatagcaattagttcaaattccacta 328  Q
    |||||||||| |||||||||| |||||||||||||||    
T  7982371 tatcacaaaacaatagcaatttgttcaaattccacta 7982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 23747382 - 23747322
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||| ||||| | |||||||||| |||||||||||| || |||||| ||| ||||||||||    
T  23747382 tattcgacaacagtttgtactaactagcatatcacagaacaatagctatttgttcaaattc 23747322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 32231825 - 32231761
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    ||||||||| |||||||||||| ||||||| ||||||||| || | |||  ||| ||||||||||    
T  32231825 ccgctatttcacaatattttgtgctaaataacatatcacagaacactagagatttgttcaaattc 32231761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 27722414 - 27722481
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactact 330  Q
    ||||||||||||||||||||| |||||||||||    || ||||||||||||||||||||| ||||||    
T  27722414 tatttgacaatattttgtacttaatagcatatcgtggaacaatagcaattagttcaaattctactact 27722481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 1202394 - 1202464
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactct 332  Q
    |||||||||||||||||| |||||||||||||||| |||||| || | ||||  ||||| ||||||||||||    
T  1202394 gctatttgacaatattttatactaaatagcatatcgcaaaat-atggtaatttcttcaatttccactactct 1202464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 9318759 - 9318705
Alignment:
Q  269 acaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||    
T  9318759 acaatattttgtactaaatagcatatcactaaacaatatgaatttgttcaaattc 9318705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 18968367 - 18968308
Alignment:
Q  228 tcaaattactatatgcaatagtgctatattgccgctatttgacaatattttgtactaaatag 289  Q
    |||||||||  |||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  18968367 tcaaattacgctatgcaatagtgttata--gccgctatttgacaacattttgtactaaatag 18968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 2562543 - 2562467
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatagt 337  Q
    ||||||||||||| |||||||||||| ||| |||||  |||| ||||| ||| ||||||||||| || | |||||||    
T  2562543 gctatttgacaatgttttgtactaaacagcgtatcaggaaattatagcgatttgttcaaattccgctgcactatagt 2562467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 13298589 - 13298522
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    ||||||||||  | ||||||||||||||||||||||| || |||||  ||| ||||||||||| ||||    
T  13298589 ctatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattccgctac 13298522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 34581643 - 34581604
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcac 297  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  34581643 gccgctatttgacaacattttgtactaaatagcgtatcac 34581604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 289
Target Start/End: Original strand, 19237629 - 19237659
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatag 289  Q
    |||||||||||||||||||||||||||||||    
T  19237629 ccgctatttgacaatattttgtactaaatag 19237659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 27121559 - 27121489
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    |||||||| |||||||||||| |||| |||||||||||||   | ||||| |||| |||||| ||||||||    
T  27121559 gccgctatctgacaatattttatactgaatagcatatcacgggacaatagtaatttgttcaatttccacta 27121489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 30617262 - 30617331
Alignment:
Q  254 tattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||| || | |||| ||| |||||||||||    
T  30617262 tattgccactatttcacaatattttgtact-aatagcgtatcacagaacactagcgatttgttcaaattcc 30617331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 207531 - 207498
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatc 295  Q
    ||||||||||||| ||||||||||||||||||||    
T  207531 ctatttgacaatactttgtactaaatagcatatc 207498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 415205 - 415144
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||||| |||| |||||||||||||||||| ||||| ||| |||||| | | ||||||||||    
T  415205 ctatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattc 415144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 46891314 - 46891356
Alignment:
Q  244 aatagtgctatattgccgctatttgacaatattttgtactaaata 288  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||    
T  46891314 aatagtgctata--gccgctatttcacaatattttgtactaaata 46891356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 1045892 - 1045848
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaataatag 307  Q
    ||||||||||||||||||| ||||| || |||||||||| |||||    
T  1045892 tatttgacaatattttgtattaaatcgcgtatcacaaaacaatag 1045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 26275537 - 26275569
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagc 290  Q
    |||||||||| ||||||||||||||||||||||    
T  26275537 gccgctatttcacaatattttgtactaaatagc 26275569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 31675044 - 31675092
Alignment:
Q  264 atttgacaatattttgtactaaatagcatatcacaaaataatagcaatt 312  Q
    ||||||||| ||||||||||||||| | |||||||| | ||||||||||    
T  31675044 atttgacaacattttgtactaaataacgtatcacaagacaatagcaatt 31675092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 39064895 - 39064935
Alignment:
Q  296 acaaaataatagcaattagttcaaattccactactctatag 336  Q
    |||||| |||||||||| |||||||||||||||| ||||||    
T  39064895 acaaaacaatagcaatttgttcaaattccactacgctatag 39064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 11257792 - 11257714
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatag 336  Q
    ||||||||||||||| ||||||||||||||||||||||  | || |||||| ||| ||||| ||||| |||| ||||||    
T  11257792 gccgctatttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacactatag 11257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 27725580 - 27725540
Alignment:
Q  249 tgctatattgccgctatttgacaatattttgtactaaatag 289  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27725580 tgctatagtgccgctatttgacaatattttgtactaaatag 27725540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 41014989 - 41015064
Alignment:
Q  247 agtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaatt 322  Q
    |||||||||| || ||||| |||||| | ||||||||||||||||||||||  || ||||||| || |||||||||    
T  41014989 agtgctatatcgcagctatatgacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 29466240 - 29466203
Alignment:
Q  263 tatttgacaatattttgtactaaatagcatatcacaaaa 301  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29466240 tatttgaca-tattttgtactaaatagcatatcacaaaa 29466203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 39258556 - 39258630
Alignment:
Q  254 tattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    |||||||| ||||||||||   ||||||||||||||  |||| || || |||| ||||| |||||||||||||||    
T  39258556 tattgccgttatttgacaaacctttgtactaaatagtgtatcgcagaacaataacaattggttcaaattccacta 39258630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 631488 - 631525
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatc 295  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  631488 gccgctatatgacaatattttgtactaaatagcgtatc 631525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 9446336 - 9446300
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatat 294  Q
    |||||||||| | ||||||||||||||||||||||||    
T  9446336 gccgctatttcataatattttgtactaaatagcatat 9446300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 17755219 - 17755275
Alignment:
Q  247 agtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaata 303  Q
    ||||||||| |||| ||||||||||| | ||||||||||||||| ||| ||| ||||    
T  17755219 agtgctatagtgcctctatttgacaacactttgtactaaatagcgtattacataata 17755275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 20981328 - 20981268
Alignment:
Q  264 atttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattcc 324  Q
    ||||||||||||||| ||||||||||| |||  || || |||||  |||||||||||||||    
T  20981328 atttgacaatattttatactaaatagcgtattgcagaacaatagtgattagttcaaattcc 20981268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 41399566 - 41399598
Alignment:
Q  257 tgccgctatttgacaatattttgtactaaatag 289  Q
    |||||||||||||||| ||||||||||||||||    
T  41399566 tgccgctatttgacaacattttgtactaaatag 41399598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 27016920 - 27016970
Alignment:
Q  257 tgccgctatttgacaatattttgtactaaatagcatatcacaaaataatag 307  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  27016920 tgccgcaatttgacaacattttgtactaaatagtatatcacaaaataatag 27016970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 162963 - 162902
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||||| ||||||||||||||||||||||  ||| || ||||||| ||||| ||||||||||    
T  162963 ctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 21754319 - 21754271
Alignment:
Q  241 tgcaatagtgctatattgccgctatttgacaatattttgtactaaatag 289  Q
    |||||||||||||||  ||||||||||||||| | ||||||||||||||    
T  21754319 tgcaatagtgctatagcgccgctatttgacaacaatttgtactaaatag 21754271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 295
Target Start/End: Original strand, 14794293 - 14794328
Alignment:
Q  260 cgctatttgacaatattttgtactaaatagcatatc 295  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14794293 cgctatttgacaatattttgtactaaatagcgtatc 14794328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 53855744 - 53855777
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatat 294  Q
    |||||||||||| |||||||||||||||||||||    
T  53855744 gctatttgacaacattttgtactaaatagcatat 53855777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 54842174 - 54842243
Alignment:
Q  239 tatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagc 308  Q
    |||||||||| ||||||   | |||||||||||| ||||| ||||||||||| ||||||| || ||||||    
T  54842174 tatgcaatagggctatagcacagctatttgacaacattttatactaaatagcgtatcacagaacaatagc 54842243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 2990960 - 2991016
Alignment:
Q  239 tatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagcatatc 295  Q
    ||||||| |||| ||||  ||| ||||||||||| ||||||||||||||||| ||||    
T  2990960 tatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtatc 2991016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 16169188 - 16169248
Alignment:
Q  277 ttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctatagt 337  Q
    ||||||| ||||||||||| || || |||||| |||||||||||| |  ||||||||||||    
T  16169188 ttgtactcaatagcatatcgcagaacaatagcgattagttcaaatactgctactctatagt 16169248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 38884077 - 38884109
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatat 294  Q
    ||||||||||||||||||||| |||||||||||    
T  38884077 ctatttgacaatattttgtaccaaatagcatat 38884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 48198079 - 48198123
Alignment:
Q  276 tttgtactaaatagcatatcacaaaataatagcaattagttcaaa 320  Q
    ||||||||||||| ||||||||| || |||||| |||||||||||    
T  48198079 tttgtactaaataacatatcacagaacaatagcgattagttcaaa 48198123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 10987843 - 10987788
Alignment:
Q  248 gtgctatattgccgctatttgacaatattttgtactaaatagcatatcacaaaata 303  Q
    |||| ||| |||||||||||||||| | ||||||||||||||||||||||| ||||    
T  10987843 gtgcaatagtgccgctatttgacaaaactttgtactaaatagcatatcacagaata 10987788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 13869837 - 13869884
Alignment:
Q  254 tattgccgctatttgacaatattttgtactaaatagcatatcacaaaa 301  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||    
T  13869837 tattgccactgtttgacaacattttgtactaaatagcatatcacaaaa 13869884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 27483115 - 27483044
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    ||||||||||||||||||||||||||  ||||| |||| || |||||||||  || ||||||||||| ||||    
T  27483115 gccgctatttgacaatattttgtactggatagcgtatctcagaataatagcggtttgttcaaattcctctac 27483044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 34297884 - 34297943
Alignment:
Q  270 caatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||  |||||||||| ||||    
T  34297884 caatattttgtactaaatagcgtattacaaaacaatagcaattcattcaaattcctctac 34297943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 12362032 - 12361983
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagc 308  Q
    ||||||||| |||||||||||||||||||||  ||||||| |||||||||    
T  12362032 ccgctatttcacaatattttgtactaaatagtgtatcacacaataatagc 12361983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 13851001 - 13851079
Alignment:
Q  254 tattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactactctat 334  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||||  |||||||| | | ||||||||| |||| ||||    
T  13851001 tattgccactatttgataacattttgtactaaatagtatatcacaaa--aatagcaacttgctcaaattcctctacgctat 13851079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 8282847 - 8282911
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    ||||||||||| || |||||||| ||||| ||||||||||| | |||||| ||| ||||||||||    
T  8282847 ccgctatttgagaacattttgtaataaatcgcatatcacaagacaatagctatttgttcaaattc 8282911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 33120557 - 33120593
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatat 294  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33120557 gccgctatttgacaacattttgtactaaatagcatat 33120593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 18899974 - 18900017
Alignment:
Q  247 agtgctatattgccgctatttgacaatattttgtactaaatagc 290  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||    
T  18899974 agtgctatattgcctctatttgacaacattttgtaataaatagc 18900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 44806321 - 44806251
Alignment:
Q  259 ccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    |||||||||||||| | ||||||||||||||| ||||   ||||| ||||| || |||||||||| |||||    
T  44806321 ccgctatttgacaacactttgtactaaatagcctatcgtgaaatagtagcagtttgttcaaattctactac 44806251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 1310194 - 1310129
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattc 323  Q
    |||||||||| ||||||| |||||||||||||  |||||   || |||||||||| ||||||||||    
T  1310194 gccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattc 1310129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 4050504 - 4050471
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatat 294  Q
    ||||||||||||||||||| ||||||||||||||    
T  4050504 gctatttgacaatattttggactaaatagcatat 4050471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 45371098 - 45371131
Alignment:
Q  261 gctatttgacaatattttgtactaaatagcatat 294  Q
    |||||||||||| |||||||||||||||||||||    
T  45371098 gctatttgacaacattttgtactaaatagcatat 45371131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 9112501 - 9112445
Alignment:
Q  239 tatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagcatatc 295  Q
    ||||||||| |||| ||  ||| |||||| |||||||| ||||||||||||||||||    
T  9112501 tatgcaatattgctgtagcgccactatttcacaatattctgtactaaatagcatatc 9112445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 41631885 - 41631944
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaat 321  Q
    ||||| ||||| | || ||||||||||||||||||||||| |||||||||| ||||||||    
T  41631885 ctattcgacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaat 41631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 29378579 - 29378502
Alignment:
Q  252 tatattgccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    ||||| ||||||||| ||||||| ||||||| ||||||| |||| || || |||| ||||| ||||||||||| ||||    
T  29378579 tatatagccgctattagacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattccgctac 29378502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 10030155 - 10030210
Alignment:
Q  236 ctatatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagca 291  Q
    ||||||||||||||||||||  |||||||||||| || ||||  ||||||||||||    
T  10030155 ctatatgcaatagtgctatagcgccgctatttgaaaacatttaatactaaatagca 10030210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 10052068 - 10052123
Alignment:
Q  236 ctatatgcaatagtgctatattgccgctatttgacaatattttgtactaaatagca 291  Q
    ||||||||||||||||||||  |||||||||||| || ||||  ||||||||||||    
T  10052068 ctatatgcaatagtgctatagcgccgctatttgaaaacatttaatactaaatagca 10052123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 24011834 - 24011905
Alignment:
Q  258 gccgctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    |||||||||| |||||||||| ||| ||||||| ||| |||||| ||| ||| || ||||||||||| ||||    
T  24011834 gccgctatttcacaatattttatacaaaatagcttattacaaaacaattgcagtttgttcaaattccgctac 24011905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 28044715 - 28044782
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccactac 329  Q
    ||||||||||| | |||||||||||| ||||||||||||| ||||| | ||  |||||||||| ||||    
T  28044715 ctatttgacaacactttgtactaaatcgcatatcacaaaacaatagtagtttattcaaattccgctac 28044782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 29415748 - 29415814
Alignment:
Q  262 ctatttgacaatattttgtactaaatagcatatcacaaaataatagcaattagttcaaattccacta 328  Q
    ||||||||||| |||||||||| ||  |||||||||| || |||||||||| ||| ||| |||||||    
T  29415748 ctatttgacaacattttgtactgaacggcatatcacagaacaatagcaatttgtttaaactccacta 29415814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University