View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029-Insertion-6 (Length: 462)
Name: NF3029-Insertion-6
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 2146013 - 2146467
Alignment:
| Q |
8 |
acgatggactccataaattaccaagaagtgattgtaacgcatacatgatcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaa |
107 |
Q |
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| T |
2146013 |
acgatggactccacaaattaccaagaagtgattgtaacgcatacatgatcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaa |
2146112 |
T |
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| Q |
108 |
cattggttcctttgcatttttagtacaattgagaaatgttacgttttcataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttg |
207 |
Q |
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| T |
2146113 |
cattggttcctttgcatttttagtacaattgagaaatgttacgttttcataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttg |
2146212 |
T |
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| Q |
208 |
aggtctatgttttgaaggaaccttcttggtggacaatcattgggatcatccatccatattctttggctctcatgggatatatttttgataacatattctt |
307 |
Q |
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| T |
2146213 |
aggtctatgttttgaaggaaccttcttggtggacaatcattgggatcatccatccatattctttggctctcataggatatatttttgataacatattctt |
2146312 |
T |
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| Q |
308 |
ttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttc |
407 |
Q |
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| T |
2146313 |
ttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttc |
2146412 |
T |
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| Q |
408 |
ttctcttaattggaaagggaagttaaaaagaaatcctaattctggggttccgcag |
462 |
Q |
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| T |
2146413 |
ttctcttaattggaaagggaagttaaaaagaagtcctaattctggggttccgcag |
2146467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 2141884 - 2142269
Alignment:
| Q |
8 |
acgatggactccataaattaccaagaagtgattgtaacgcatacatgatcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaa |
107 |
Q |
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| T |
2141884 |
acgatggactccacaaattactaagaggtgattgtaacgtatacatgatcgaatacttgtcattgcttagacaaggta---tattaggaagatcatcaaa |
2141980 |
T |
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| Q |
108 |
cattggttcctttgc---atttttagtacaattgagaaatgttacgttttc---ataatgagtactatgataaagtctgtcccgttggaaaagtgaatca |
201 |
Q |
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| T |
2141981 |
cattggtccgtttgcaaaattggtagtacagttgagaaatgttacgttttcataataatgagtactatgatcaaatctgtcccattggaaaggtgaatca |
2142080 |
T |
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| Q |
202 |
tcgttgaggtctatgttttgaaggaaccttcttggtggacaatcattgggatcatccatccatattctttggctctcatgggatatatttttgataacat |
301 |
Q |
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| T |
2142081 |
ttgttgaggtctatg--ttcaaggaaccgtcttggtgaacaaccattaggatcatccaaccaaattctttgacttgcatgggaaaattttttgacaataa |
2142178 |
T |
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| Q |
302 |
attcttttccatttgagagtgtaatcaaaggttg---cttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgatt |
389 |
Q |
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| T |
2142179 |
attctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacatcgatcactttgatt |
2142269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 71 - 428
Target Start/End: Original strand, 2151483 - 2151843
Alignment:
| Q |
71 |
tgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgca---tttttagtacaattgagaaatgttacgttttcataatgagtact |
167 |
Q |
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| T |
2151483 |
tgcttagacaaggtatatta---ggaagatcatcaaa---tggttccttttcaacattgttggtacaattgagaaatattacgttttcataatggtcatt |
2151576 |
T |
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| Q |
168 |
atgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgt------tttgaaggaaccttcttggtggacaatcattgggatcatccatc |
261 |
Q |
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| T |
2151577 |
ttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgacc |
2151676 |
T |
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| Q |
262 |
catattctttggctctcatgggatatatttttgataacatattcttttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagc |
361 |
Q |
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| T |
2151677 |
aaaattctttgtctctcacggtaaatatgtttgacaacaaattctcttccatttgagagtgtaatcaaaggttgcttattcttgcaaacaacttcaaatc |
2151776 |
T |
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| Q |
362 |
ctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
428 |
Q |
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| T |
2151777 |
ctgggtacacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaa |
2151843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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