View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029-Insertion-7 (Length: 438)
Name: NF3029-Insertion-7
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 6539921 - 6540064
Alignment:
| Q |
7 |
agaaaccactactcagctagccagagctgtttacttgattaacatcagtagcaaggattattcggcttatcatctgattcactattttattttgatcatc |
106 |
Q |
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| T |
6539921 |
agaaaccactactcagctagctagagctgtttacttgattaacatcagtagcaaggattattcggcttatcatctgattcactattttattttgatcatc |
6540020 |
T |
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| Q |
107 |
aggttttggttatttttcttatcgtctgatttcatgatttggga |
150 |
Q |
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| T |
6540021 |
aggttttggttatttttcttatcgtctgatttcatgatttggga |
6540064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 6540069 - 6540153
Alignment:
| Q |
199 |
tttcatattgaaatgtcgtgttaatttgggaaatttttgcctaattgttattataggataaattgggacgagtttagtttctatc |
283 |
Q |
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| T |
6540069 |
tttcatattgaaatgtcgtgttaatttgggaaatttttgcctaattgttattataggataaattgggacgagtttagtttctatc |
6540153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 7159457 - 7159332
Alignment:
| Q |
27 |
ccagagctgtttacttgattaacatcagtagcaaggattattcggcttatcatctgattcact----attttattttgatcatcaggttttggttatttt |
122 |
Q |
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| T |
7159457 |
ccagagctgtttacttgactaacatcagtagcaatgattgttcggtttatcttctgattcactcactatattattttgatcatcaggttttggttgtttg |
7159358 |
T |
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| Q |
123 |
tcttatcgtctgatttcatgatttgg |
148 |
Q |
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| T |
7159357 |
tcttttcgtctgatttcaagatttgg |
7159332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 7179636 - 7179559
Alignment:
| Q |
329 |
aatctttctatatctttaacatgttattcatatgtaatctcaaagttaggtccattaacctttttgtggaaaggatta |
406 |
Q |
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| T |
7179636 |
aatcttcctatatctttaacaggttattcatatgtaatctcaaagttaggtccattaacctttacgaggaaaggatta |
7179559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 328
Target Start/End: Complemental strand, 7159221 - 7159087
Alignment:
| Q |
195 |
ttgttttcatattgaaatgtcgtgttaatttgggaaatttttgcc-taattgttattataggataaattgggacgagtttagtttctatcgtcgttgtga |
293 |
Q |
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|||||||||| ||||||||| |||||||||||||||| || | | |||||| |||| |||||| ||||||| | |||||| ||||||| | | |||| | |
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| T |
7159221 |
ttgttttcatcttgaaatgttgtgttaatttgggaaacttctcacgtaattgctattttaggatcaattggggcaagtttattttctattggcattgtta |
7159122 |
T |
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| Q |
294 |
ttcataacattagggctgggttcaaatggtgtgcc |
328 |
Q |
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| T |
7159121 |
ttcataacattaggactgggttcagatggtgtgcc |
7159087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 7563553 - 7563493
Alignment:
| Q |
73 |
ttatcatctgattcactattttattttgatcatcaggttttggttatttttcttatcgtctga |
135 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||| |
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| T |
7563553 |
ttatcatctgattcactatt--attttgatcatcaggtttaggttgtttttcttattgtctga |
7563493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 24797693 - 24797868
Alignment:
| Q |
7 |
agaaaccactactcagctagccagagctgtttacttgattaacatcagtagcaaggattattcggcttatcatctgattcactattttattttgatcatc |
106 |
Q |
| |
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||||||||| |||| ||| | ||||||||||||||||||||||| | |||| || |||||||| | |||||||||||||| |||| |||| | |||||| |
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| T |
24797693 |
agaaaccacaactctgctggtcagagctgtttacttgattaacaccggtagaaacgattattcagtttatcatctgattcgctatattatatcaatcatc |
24797792 |
T |
|
| Q |
107 |
aggttttggttatttttcttatcgtctgatttcatgatttgggagatagtttacttatgcttaatgctaatttatg |
182 |
Q |
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||| |||||| ||||||||||||||||| ||||| |||||||| ||||||| || |||||||||||||||||||| |
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| T |
24797793 |
cggtgttggttgtttttcttatcgtctgagttcataatttgggacatagtttcctcatgcttaatgctaatttatg |
24797868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 24725608 - 24725711
Alignment:
| Q |
78 |
atctgattcactattttattttgatcatcaggttttggttatttttcttatcgtctgatttcatgatttgggagatagtttacttatgcttaatgctaat |
177 |
Q |
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||||| |||||||| |||||| |||||| ||| |||||| ||||||||||| ||||| ||||| |||| | | ||||||| || ||||||||||| ||| |
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| T |
24725608 |
atctggttcactatattatttcaatcatccggtgttggttgtttttcttatcatctgagttcataatttcgaacatagttt-ctcatgcttaatgcaaat |
24725706 |
T |
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| Q |
178 |
ttatg |
182 |
Q |
| |
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||||| |
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| T |
24725707 |
ttatg |
24725711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 3011941 - 3011860
Alignment:
| Q |
52 |
cagtagcaaggattattcggcttatcatctgattcactattttattttgatcatcaggttttggttatttttcttatcgtctga |
135 |
Q |
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| T |
3011941 |
cagtagcaacggttgttctgtttatcatctgattcactatt--attttgatcatcagatttaggttgtttttcttattgtctga |
3011860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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