View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029-Insertion-9 (Length: 396)
Name: NF3029-Insertion-9
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 33367801 - 33367414
Alignment:
| Q |
8 |
caaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttaccaagtctcttgggacgtg |
107 |
Q |
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| T |
33367801 |
caaacgtgattgtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttaccaagtctcttgggacgtg |
33367702 |
T |
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| Q |
108 |
attctagttgatgggccaagagggtactttccggcagcttcagagagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaa |
207 |
Q |
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| T |
33367701 |
attctagttgatgggccaagagggtactttccggcagctccagggagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaa |
33367602 |
T |
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| Q |
208 |
aaactcacgtttttgttcatgatttttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagtt |
307 |
Q |
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| T |
33367601 |
aaactcacgtttttgttcatgatttttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagtt |
33367502 |
T |
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| Q |
308 |
aaggcattttgtgataaagagtgaaaccgaaaatggtgagagttttgagttttgcaaaagttcgagctcccagtaaaattgtgtaggag |
396 |
Q |
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| T |
33367501 |
aaggcattttgtgataaagagtgaaaccgaaaatggtgagagttttgagttttgcaaaagttcaagc-cccagtaaaattgtgtaggag |
33367414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 370
Target Start/End: Complemental strand, 33371977 - 33371640
Alignment:
| Q |
33 |
aatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggt |
132 |
Q |
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| T |
33371977 |
aatttgttattctcagagtgtaaactcggaatcaacgatttgccgaatcacatttaccaagtctcttgggatgtgattcttgttgatgggccaagagggt |
33371878 |
T |
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| Q |
133 |
actttccggcagcttcagagagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaaaaactcacgtttttgttcatgattt |
232 |
Q |
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| T |
33371877 |
actttccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaaatgggaaaaactcacatatttgttcatgattt |
33371778 |
T |
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| Q |
233 |
ttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaaggcattttgtgataaagagtgaa |
332 |
Q |
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| T |
33371777 |
tggaagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttagggcattttgtggtgaagagtgaa |
33371678 |
T |
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| Q |
333 |
accgaaaatggtgagagttttgagttttgcaaaagttc |
370 |
Q |
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| T |
33371677 |
accgacagtggtgaaagttctgagttttgcagaagttc |
33371640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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