View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029R-Insertion-5 (Length: 400)

Name: NF3029R-Insertion-5
Description: NF3029R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029R-Insertion-5
NF3029R-Insertion-5
[»] chr4 (5 HSPs)
chr4 (9-320)||(35106484-35106795)
chr4 (9-109)||(35073065-35073165)
chr4 (14-109)||(36296843-36296932)
chr4 (12-109)||(35097526-35097617)
chr4 (330-400)||(35106345-35106415)
[»] chr6 (2 HSPs)
chr6 (9-109)||(24014564-24014658)
chr6 (9-109)||(24041121-24041215)
[»] chr1 (1 HSPs)
chr1 (12-129)||(3122898-3123008)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 35106795 - 35106484
Alignment:
Q  9 aaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgaca 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106795 aaaggaaaatccttgaatgggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgaca 35106696  T
Q  109 tgtttgatgtagttgagaactctagaagttgagagtagtagattgttaacttgcagtcaatgcttagtgtgaatcatctgctttgcaggcacggtttata 208  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106695 tgtttgatgtagttgagaactctggaagttgagcgtagtagatttttaacttgcagtcaatgcttagtgtgaatcatctgctttgcaggcacggtttata 35106596  T
Q  209 aaagagatggaggaattcatcatgtaacttccagaaaatgctgtttattgattcgttctatccctactgttcttgaaaattctgaaacattctagagttc 308  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35106595 aaagagatggaggtattcatcatgtaacttccagaaaatgctgtttattgattcgttctatccctactgttcttcaaaattctgaaacattctagagttc 35106496  T
Q  309 ttgagatgagag 320  Q
    ||||||||||||    
T  35106495 ttgagatgagag 35106484  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 35073065 - 35073165
Alignment:
Q  9 aaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgaca 108  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35073065 aaaggaaaatccttgaatgggtcccacacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcagcgaca 35073164  T
Q  109 t 109  Q
    |    
T  35073165 t 35073165  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 36296843 - 36296932
Alignment:
Q  14 aaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 109  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| ||||||    
T  36296843 aaaatccttaaagggatcccaaacatcaagggagaatggatcgaaaacgttgctcct------tcggccaccaaagaaacttggaatcagcgacat 36296932  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 35097617 - 35097526
Alignment:
Q  12 ggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 109  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||  |||||||||||      |||||||||||||||||||||||||||||||    
T  35097617 ggaaaatccttgaagggatcccaaacgtcaagagagaatggatcaaaagtgttgctccttc------ggccaccaaagaaacttggaatcaacgacat 35097526  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 35106415 - 35106345
Alignment:
Q  330 taaagggaattgcatcattgagttattggatttgattacnnnnnnnnntgttagtttttcttttctcacct 400  Q
    |||||||||||||||||||||||||||||||||||||||         |||| ||||||||||||||||||    
T  35106415 taaagggaattgcatcattgagttattggatttgattacaaaaaaaaatgttggtttttcttttctcacct 35106345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 24014564 - 24014658
Alignment:
Q  9 aaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  24014564 aaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctcct------tcggccaccaaagaaacttggaatcaacgaca 24014657  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 24041121 - 24041215
Alignment:
Q  9 aaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgaca 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||      |||||||||||||||||||||||||| |||||    
T  24041121 aaaggaaaatccttgaaggggtcccaaacgtcaagggaaaatggatcaaaagtgttgctcct------tcggccaccaaagaaacttggaatcagcgaca 24041214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 3123008 - 3122898
Alignment:
Q  12 ggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatgt 111  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |      |||||||||||||||||||||||||| |||||| |    
T  3123008 ggaaaatccttgaaggggtcccaaacgtcgaggaagaagggatcgaaaacgttgctcat------tcggccaccaaagaaacttggaatcagcgacat-t 3122916  T
Q  112 ttgatgtagttgagaact 129  Q
    |||||| |||||||||||    
T  3122915 ttgatgaagttgagaact 3122898  T

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