View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029R-Insertion-6 (Length: 341)

Name: NF3029R-Insertion-6
Description: NF3029R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029R-Insertion-6
NF3029R-Insertion-6
[»] chr4 (3 HSPs)
chr4 (8-341)||(5220682-5221015)
chr4 (249-298)||(17912803-17912852)
chr4 (259-295)||(49824620-49824656)
[»] chr7 (3 HSPs)
chr7 (68-146)||(25329903-25329981)
chr7 (68-146)||(25323737-25323815)
chr7 (77-146)||(9988879-9988948)
[»] chr8 (1 HSPs)
chr8 (77-146)||(14331912-14331981)
[»] chr1 (1 HSPs)
chr1 (249-298)||(19609178-19609227)
[»] chr5 (1 HSPs)
chr5 (257-289)||(8397042-8397074)
[»] chr2 (2 HSPs)
chr2 (249-281)||(7252250-7252282)
chr2 (249-289)||(33456032-33456072)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 5221015 - 5220682
Alignment:
Q  8 atagatattctcaatctacagatgattttgtattaannnnnnnatttaatttggatgatatgaaaggtagaaggtgcagcaaatgaagatggcaggaagc 107  Q
    |||||||||||||||||| ||||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5221015 atagatattctcaatctaaagatggttttgtattattatttttatttaatttggatgatatgaaaggtagaaggtgcagcaaatgaagatggcaggaagg 5220916  T
Q  108 caagcatatgggatacctttgcacatgctggcaatggtactctttcttatttatttgtctcaaatttttgtgaagatcaagtataaaatcatattgnnnn 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        
T  5220915 caagcatatgggatacctttgcacatgctggcaatggtactctttcttatttatttgtctcaaatttttgtgaagattaagtataaaatcatattgaaaa 5220816  T
Q  208 nnngtcatttatcttaaccagataaaactttcatgatgaagtttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgagggtcgatgtct 307  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5220815 aaagtcatttatcttaaccagataaaactttcatgatgaagtttgggtggagcctaactcaaccctacaaaaccggcttgtagagtgagggtcgatgtct 5220716  T
Q  308 tctacataaaattttaatttcaagcatgatgtca 341  Q
    ||||||||||||||||||||||||||||||||||    
T  5220715 tctacataaaattttaatttcaagcatgatgtca 5220682  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 17912852 - 17912803
Alignment:
Q  249 tttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgaggg 298  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  17912852 tttgggttgggcctaactcaaccctacaaaaccggcttgtagagtgaggg 17912803  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 49824656 - 49824620
Alignment:
Q  259 gcctaactcaaccctacaaaaccggtttgtagagtga 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  49824656 gcctaactcaaccctacaaaaccggtttgtagagtga 49824620  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 25329981 - 25329903
Alignment:
Q  68 tgaaaggtagaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta 146  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||    
T  25329981 tgaaagtttgaaggtgcagcaaatgaagatggcaggaaaccaagcatatgggatacctttgcccatggtggaaatggta 25329903  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 25323815 - 25323737
Alignment:
Q  68 tgaaaggtagaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta 146  Q
    |||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||  | |||||||| |||||||    
T  25323815 tgaaaggttgagggtgcagcaaataaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggta 25323737  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 9988879 - 9988948
Alignment:
Q  77 gaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta 146  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||||||||| | || ||| |||||||    
T  9988879 gaaggtgcatcaaatgaagacggtaggaaaccaagcatatgggatacctttgcccgtggtggaaatggta 9988948  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 14331912 - 14331981
Alignment:
Q  77 gaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta 146  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| |||||||    
T  14331912 gaaggtgcagcaaatgaagatggtaggaaaccaagcatatgggatacctttgcccatggtggaaatggta 14331981  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 19609178 - 19609227
Alignment:
Q  249 tttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgaggg 298  Q
    ||||||| ||||||||||||||| ||||||||||| |||||  |||||||    
T  19609178 tttgggttgagcctaactcaaccttacaaaaccggcttgtaaggtgaggg 19609227  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 8397074 - 8397042
Alignment:
Q  257 gagcctaactcaaccctacaaaaccggtttgta 289  Q
    ||||||||||||||||||||||||||| |||||    
T  8397074 gagcctaactcaaccctacaaaaccggcttgta 8397042  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 7252282 - 7252250
Alignment:
Q  249 tttgggtggagcctaactcaaccctacaaaacc 281  Q
    ||||||| |||||||||||||||||||||||||    
T  7252282 tttgggttgagcctaactcaaccctacaaaacc 7252250  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 33456072 - 33456032
Alignment:
Q  249 tttgggtggagcctaactcaaccctacaaaaccggtttgta 289  Q
    ||||||| | ||||||||||||| |||||||||||||||||    
T  33456072 tttgggttgggcctaactcaaccttacaaaaccggtttgta 33456032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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