View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_high_1 (Length: 1046)
Name: NF3029_high_1
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 367 - 1029
Target Start/End: Complemental strand, 443400 - 442737
Alignment:
| Q |
367 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaataataaatttagggattgttatatat |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
443400 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaatgataaatttagggattgttatatat |
443301 |
T |
|
| Q |
467 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggta-ttagcacgacatacacacaagttactctctaat |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
443300 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggtacttagcacgacatacacacaagttactctctaat |
443201 |
T |
|
| Q |
566 |
gcaattgagaaaactcaaacacaatctgaacaacaacatcaacaaaaatgttcccctagaccacaaagttgaacctgagagagtgacaaaaacaaggaac |
665 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443200 |
gcaattgagaaaactcaaacacaatctgaacaacaacatcaacaagaatgttcccctagaccacaaagttgaacctgagagagtgacaaaaacaaggaac |
443101 |
T |
|
| Q |
666 |
taccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatgaattctacacagaagaagttcca |
765 |
Q |
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| T |
443100 |
taccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatgaattctacacagaagaagttcca |
443001 |
T |
|
| Q |
766 |
ataataaaagcaaatgaagttctatagtttcatgtgttccttcatcttcatcaaccacaacataaaattctccctgattttgattggtctcataattata |
865 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443000 |
ataataaaagcaaatgaagttctatagtttcatgtgttccttcatcttcatcaaccacaacataaaattctccctgattttgattggtctcataattata |
442901 |
T |
|
| Q |
866 |
gtactaataataataacaaataatattggtgacagaaagctagtgtttgatgttcctcataatcagtatccttctctaaaattttattcaaaatttaagc |
965 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
442900 |
gtactaataataataacaaataatattggtgacagaaagctagtgtttgatgttcctcataatcagtatccttctctaaaattttattcaagatttaagc |
442801 |
T |
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| Q |
966 |
taaaccaatgatgcaccttaggatgtaccaaatgatggaaaagttcagtaattgacaaacctgt |
1029 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
442800 |
taaaccaatgatgcaccttaggatgtaccaaatgatggaaaagttcagtaattgacaaacctgt |
442737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 443724 - 443394
Alignment:
| Q |
10 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443724 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
443625 |
T |
|
| Q |
110 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443624 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
443525 |
T |
|
| Q |
210 |
gctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtcc |
307 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
443524 |
gctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtcc |
443425 |
T |
|
| Q |
308 |
ctaaatatgtaaggacccataacattagtcc |
338 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
443424 |
ctaaatatgtaaggacccataacattagtcc |
443394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 465379 - 465466
Alignment:
| Q |
192 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||| |||||||||||||| |||||| |
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| T |
465379 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaa |
465466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 444754 - 444670
Alignment:
| Q |
195 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
277 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||| |
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| T |
444754 |
gtgcaaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
444670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 544 - 610
Target Start/End: Original strand, 29571722 - 29571791
Alignment:
| Q |
544 |
tacacacaagttactctctaatgcaat---tgagaaaactcaaacacaatctgaacaacaacatcaacaa |
610 |
Q |
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||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
29571722 |
tacacacaagttactttctaatgcaataattgagcaaactcaaacacaatctgaacaagaacctcaacaa |
29571791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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