View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_high_11 (Length: 249)
Name: NF3029_high_11
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 17196463 - 17196703
Alignment:
| Q |
1 |
caatcataaagaacaggaacaagagatttccattgagagtacttctcatcaacagaagcttgttgttgctgctgctgatgaagctgttgctgttgctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196463 |
caatcataaagaacaggaacaagagatttccattgagagtacttctcatcaacagaagcttgttgttgctgctgctgatgaagctgttgctgttgctttt |
17196562 |
T |
|
| Q |
101 |
ccttcttcgattctctcggtgtcttcacttgtgatggttcttctctcttgtcttccttgggtttaggtttgcgtcctcttgtctccttcttcttcacggc |
200 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196563 |
ccttcttcgattctctcggtgacttcacttgtgatggttcttctctcttgtcttccttgggtttaggtttgcgtcctcttgtctccttcttcttcacggc |
17196662 |
T |
|
| Q |
201 |
gccggttgagggtggtgtctccatttctcacgctctgtgct |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17196663 |
gccggttgagggtggtgtctccatttctcactctctgtgct |
17196703 |
T |
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