View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_high_6 (Length: 411)
Name: NF3029_high_6
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 218 - 398
Target Start/End: Original strand, 2626221 - 2626401
Alignment:
| Q |
218 |
caaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggacaatg |
317 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2626221 |
caaggatcaattcaagaaaatattgaagtcacggaccatgatttgaacaatagcatagatatgaatttgggagacaacatagaccatgagttggacaatg |
2626320 |
T |
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| Q |
318 |
gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcactatttcttcttct |
398 |
Q |
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| T |
2626321 |
gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcattatttcttcttct |
2626401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 2626002 - 2626148
Alignment:
| Q |
214 |
catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2626002 |
catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgggagacaacatagaccatgagttggac |
2626101 |
T |
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| Q |
314 |
aatggtaagttatttttctttaactcattcattaataattttttctt |
360 |
Q |
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| T |
2626102 |
aatggtaagttatttttctttaactcattcattaataattttttctt |
2626148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 2625834 - 2625910
Alignment:
| Q |
19 |
gatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttgaaacgatttattttatgtgtacag |
95 |
Q |
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| T |
2625834 |
gatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttgaaacgatttattttatgtgtacag |
2625910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 33661257 - 33661127
Alignment:
| Q |
227 |
attcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaa---------catagaccatgagttggacaatg |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| || | || |||| |||||||||| |
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| T |
33661257 |
attcaagaaaatactgaagtcacataccatgatttggacaatggtatagatatgaatttggaagacaatttagaagtcacaaacaatgatttggacaatg |
33661158 |
T |
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| Q |
318 |
gtaagttatttttctttaactcattcattaa |
348 |
Q |
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| T |
33661157 |
gtaagttatttttctttagctcattcattaa |
33661127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 22367106 - 22367168
Alignment:
| Q |
298 |
agaccatgagttggacaatggtaagttatttttctttaactcattcattaataattttttctt |
360 |
Q |
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| T |
22367106 |
agaccatgatttggacaatggtaagttgtttttatttaactcattcattaagaattttttctt |
22367168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 17352490 - 17352529
Alignment:
| Q |
359 |
ttcattgttgttcaaagagtctttcactatttcttcttct |
398 |
Q |
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| T |
17352490 |
ttcattgttgtccaaagagtcttccactatttcttcttct |
17352529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 22367088 - 22367126
Alignment:
| Q |
232 |
agaaaatattgaagtcacataccatgatttggacaatgg |
270 |
Q |
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|||||||||||||||| || ||||||||||||||||||| |
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| T |
22367088 |
agaaaatattgaagtcccagaccatgatttggacaatgg |
22367126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 51242223 - 51242176
Alignment:
| Q |
351 |
attttttcttcattgttgttcaaagagtctttcactatttcttcttct |
398 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51242223 |
atttcttcttcattgttgttcaaagagtctttcactatttcttcttct |
51242176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 51242289 - 51242249
Alignment:
| Q |
357 |
tcttcattgttgttcaaagagtctttcactatttcttcttc |
397 |
Q |
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| T |
51242289 |
tcttcaatgttgttcaaggagtcttccactatttcttcttc |
51242249 |
T |
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