View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_10 (Length: 356)
Name: NF3029_low_10
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 6539926 - 6539613
Alignment:
| Q |
17 |
gtttcttcatctcctacttctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatcac |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539926 |
gtttcttcatctcctacttctatctcactacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatcac |
6539827 |
T |
|
| Q |
117 |
atcatcaaactctcttaaacacaactgtcatatataatcacttaataactctttaccatatgtgtcagctcaaccagaagagtttgactttctaaattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6539826 |
atcatcaaactctcttaaacacaactgtcatatataatcacttaataactctttaccatatgtgtcagctcaacgagaagagtttgactttctaaattta |
6539727 |
T |
|
| Q |
217 |
acaggcacagatcaaataccacagttgtaaaatgattatcagtgactcttaattaatgataatttctacattcctcaatatctccctcttcaacaataca |
316 |
Q |
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| T |
6539726 |
acagg--------------catagttgtaaaatgattattagtgactcttaattaatgataatttctacattcctcaatatctccctcttcaacaaaaca |
6539641 |
T |
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| Q |
317 |
ttaattacattccgcaggagcactttca |
344 |
Q |
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| T |
6539640 |
ttaattacattccgcaggagcactttca |
6539613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 11784369 - 11784235
Alignment:
| Q |
17 |
gtttcttcatctcctact-tctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatca |
115 |
Q |
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| T |
11784369 |
gtttcttcatctcctagtctctgtctcaatactttcttgacattcttcaaataagtcaattgtgtctttagatctgtcacctggaaatatccaaacacca |
11784270 |
T |
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| Q |
116 |
catcatcaaactctcttaaacacaactgtcatatata |
152 |
Q |
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| T |
11784269 |
tatcatcaaaatctc--atacacaaatgtcatatata |
11784235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 11770702 - 11770613
Alignment:
| Q |
43 |
agtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatcacatcatcaaactctctt |
132 |
Q |
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| T |
11770702 |
agtacgttcttgacattcttgaaataagtcaattgtgtctctagatctatcacctggaaatatataaacaccatatcatcaaactctctt |
11770613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 11778952 - 11778863
Alignment:
| Q |
17 |
gtttcttcatctcctact-tctatctcagtacctttttgacattcttaaaataaaacaattgagtctttaaatctatcacccggaaatat |
105 |
Q |
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| T |
11778952 |
gtttcttcatctcctagtctctgtctcaatactttcttgacattcttgaaataattcaattgtgtctttagatctatcacctggtaatat |
11778863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 11764502 - 11764435
Alignment:
| Q |
55 |
acattcttaaaataaaacaattgagtctttaaatctatcacccggaaatatcaaaatatcacatcatc |
122 |
Q |
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|||||||| |||||| |||||||||||||| |||| ||||| | |||||||||||| ||| |||||| |
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| T |
11764502 |
acattcttgaaataagtcaattgagtctttagatctttcacctgaaaatatcaaaatttcatatcatc |
11764435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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