View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029_low_11 (Length: 348)

Name: NF3029_low_11
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029_low_11
NF3029_low_11
[»] chr4 (8 HSPs)
chr4 (21-318)||(22990246-22990545)
chr4 (21-318)||(22714680-22714979)
chr4 (17-318)||(28948933-28949236)
chr4 (17-323)||(22696864-22697172)
chr4 (17-338)||(46956533-46956859)
chr4 (264-338)||(28949216-28949290)
chr4 (264-338)||(22714959-22715033)
chr4 (264-338)||(22990192-22990266)
[»] chr7 (1 HSPs)
chr7 (17-338)||(20087585-20087908)
[»] scaffold0009 (2 HSPs)
scaffold0009 (21-318)||(200553-200862)
scaffold0009 (264-338)||(200842-200916)
[»] chr8 (1 HSPs)
chr8 (17-323)||(19646298-19646606)
[»] chr1 (1 HSPs)
chr1 (17-323)||(4344211-4344518)
[»] chr5 (1 HSPs)
chr5 (17-323)||(22808084-22808392)
[»] chr2 (1 HSPs)
chr2 (17-310)||(23362369-23362651)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 22990545 - 22990246
Alignment:
Q  21 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990545 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 22990446  T
Q  121 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990445 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 22990346  T
Q  221 gacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaattcatagtacttcctagctt 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||||||||||||||| ||||| |||    
T  22990345 gacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaattcatagtacatcctatctt 22990247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 22714680 - 22714979
Alignment:
Q  21 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714680 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 22714779  T
Q  121 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 220  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714780 catagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 22714879  T
Q  221 gacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaattcatagtacttcctagctt 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||||||||||||||| ||||| |||    
T  22714880 gacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaattcatagtacatcctatctt 22714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 28948933 - 28949236
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  28948933 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttatttgtacttcataagagt 28949032  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949033 acttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 28949132  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | ||||||||||||||||||||||||| ||||||    
T  28949133 taaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattcatagtacatcctag 28949232  T
Q  315 ctta 318  Q
    ||||    
T  28949233 ctta 28949236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 22697172 - 22696864
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22697172 caacataagtgaaccataaatacgagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 22697073  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  22697072 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcaaagttaccggtacttcctagattacttcttaatt 22696973  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    |||||||||| || |||||||||||||||||||||||| || | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  22696972 taaagacaacagagcattacaacattaaagactaaacaaaatagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 22696873  T
Q  315 cttacttcc 323  Q
     ||| ||||    
T  22696872 gttaattcc 22696864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 46956859 - 46956533
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| |||    
T  46956859 caacataagtgaacaaaaaatacaagcataattatcacacaacataagccttcattaaggtatagaaacattacataagttactagtacttcataatagt 46956760  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  46956759 acttcatagttactagcacttcttagattacttcctaattaaaaggcaaaacataacagtacttgatagttactagtacttcctagattacttcttaatt 46956660  T
Q  217 taaagacaacggaacattacaacattaaagacta---aacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcc 311  Q
    |||||| || ||||||||||||||||||||||||   || |||||| | |||||||||   |  ||   | ||||||||||||||||||||||||||| |    
T  46956659 taaagataatggaacattacaacattaaagactaaataatataacagtgcttcatagttactagtacttcctagattacttcttaattcatagtactttc 46956560  T
Q  312 tagcttacttcctagtcacacaggttc 338  Q
    |||||||||||||||||||||||||||    
T  46956559 tagcttacttcctagtcacacaggttc 46956533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 28949216 - 28949290
Alignment:
Q  264 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 338  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28949216 ttcatagtacatcctagcttagattgcttcttaactcatagtacttcctagcttacttcctagtcacataggttc 28949290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 22714959 - 22715033
Alignment:
Q  264 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 338  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22714959 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 22990266 - 22990192
Alignment:
Q  264 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 338  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22990266 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22990192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 20087908 - 20087585
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||||||| |||    
T  20087908 caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataatagt 20087809  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  20087808 acttcatagttactagtacttcttagattacttcctaattaaaaggcaaaacataacagtacttcatagttactagtactttctagattacttcttaatt 20087709  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    |||||| ||||||||||||||||||||||||||||| |||||| |||||||||||   |  ||   | |||||||||||||||||||||  |||||||||    
T  20087708 taaagataacggaacattacaacattaaagactaaatataacagtacttcatagttactagtacttcctagattacttcttaattcataagacttcctag 20087609  T
Q  315 cttacttcctagtcacacaggttc 338  Q
    ||||||||||||||||||| ||||    
T  20087608 cttacttcctagtcacacaagttc 20087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 200553 - 200862
Alignment:
Q  21 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200553 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 200652  T
Q  121 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataac----------agtacttcatagttacaggtacttcctagattacttc 210  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||||||    
T  200653 catagttactagcacttcttagattaattcctaattgaaaggaaaaacataacagtacttcatagtacttcatagttacaggtacttcctagattacttc 200752  T
Q  211 ttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | |||||||||||||||||||||||||     
T  200753 ttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattcatagtaca 200852  T
Q  309 tcctagctta 318  Q
    ||||||||||    
T  200853 tcctagctta 200862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 200842 - 200916
Alignment:
Q  264 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  200842 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctaatcacagaggttc 200916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 19646606 - 19646298
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  19646606 caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaatattacataagttactggtacttcataagagt 19646507  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  19646506 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttaccggtacttcctagattacttcttaatt 19646407  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    |||||||||| |||||||||||||||||||| ||||||||| | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  19646406 taaagacaacagaacattacaacattaaagattaaacataagagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 19646307  T
Q  315 cttacttcc 323  Q
    |||| ||||    
T  19646306 cttaattcc 19646298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 4344518 - 4344211
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  4344518 caacataagtgaacaaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 4344419  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  4344418 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttactggtacttcctagattacttcttaatt 4344319  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  4344318 taaagacaacgaaacatta-aacattaaagactaaacataacagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 4344220  T
Q  315 cttacttcc 323  Q
    |||| ||||    
T  4344219 cttaattcc 4344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 22808392 - 22808084
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  22808392 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaaaattacataagttactagtacttcataagagt 22808293  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  22808292 acttcatggttactaccacttcttagattacttcctaattgaaaagaaaaatataatagtacttcatagttactagtacttcctagattacttcttaatt 22808193  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||   | ||||||||||||||||| ||||||||||||||    
T  22808192 taaagataacggaacattacaacattaaagactaaacataacaatacttcatagttactagtacttcatagattacttcttaatttatagtacttcctag 22808093  T
Q  315 cttacttcc 323  Q
    |||| ||||    
T  22808092 cttaattcc 22808084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 23362369 - 23362651
Alignment:
Q  17 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||             |||    
T  23362369 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaacattacataagttact-------------agt 23362455  T
Q  117 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 216  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23362456 acttcatggttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcatagttattagtacttcctagattacttcttaatt 23362555  T
Q  217 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  ||   | ||||||||||||||||||||||||||||    
T  23362556 taaagacaacggaacattacaacattaaagactaaacataacaatacttaatagttactagtacttcgtagattacttcttaattcatagtacttc 23362651  T

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