View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_12 (Length: 311)
Name: NF3029_low_12
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 4570538 - 4570275
Alignment:
| Q |
17 |
agataaaggcatgaaaggatcattgactggaagtggagaatatactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtgg |
116 |
Q |
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| T |
4570538 |
agatacaggcatgaaaggatcattgactggaagtggagaatatactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtgg |
4570439 |
T |
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| Q |
117 |
cagtaagtatcttatcaatgtgaatcttattctattcaatatttatatactgtttatattctttgaatagtgtttcaatgccaatgcaaaattaaccttt |
216 |
Q |
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| T |
4570438 |
cagtaagtatcttatcaatgtgaatcttattctattcaatatttatatactgtttatattctttgaatagtgtttcaatgccaatgcaaaattaaccttt |
4570339 |
T |
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| Q |
217 |
gttttttaaaactatagtatagtttcttgtgcttaacaattaatactatatataactcttgtaa |
280 |
Q |
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| T |
4570338 |
gttttttaaaactatagtatagtttcttgtgcttaacaattactactatatataactcttgtaa |
4570275 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 43337693 - 43337608
Alignment:
| Q |
44 |
tggaagtggagaatatactcttgtttatgaagataatgaaggagacaagatgctagtaggggacgtgccgtggcagtaagtatctt |
129 |
Q |
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| T |
43337693 |
tggaagtggagagtatactcttgtatatgaggataatgaaggagacaggatgcttgttggtgatgtcccatggcagtaagcatctt |
43337608 |
T |
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