View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_14 (Length: 273)
Name: NF3029_low_14
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 36 - 256
Target Start/End: Original strand, 30506440 - 30506657
Alignment:
| Q |
36 |
atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagaattgacaatcattttactcctccattaatt-aagaaaaatgata |
134 |
Q |
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| T |
30506440 |
atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagagttgacgatcatttcactcctccattaattaaagaaaaatgata |
30506539 |
T |
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| Q |
135 |
tttaaacaattannnnnnnacaacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttggtcattatattgttaataa |
234 |
Q |
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| T |
30506540 |
tttaaataactatttttttacaact----tgacaattttctcttttatacttatattttgtattcactctctattgttttggccattatgtcgtcaataa |
30506635 |
T |
|
| Q |
235 |
ccaaatttctttatgtatttta |
256 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30506636 |
ccaaatttctttatgtatttta |
30506657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 10731575 - 10731612
Alignment:
| Q |
154 |
acaacttttgtaacaattttctcttttatactcatatt |
191 |
Q |
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| T |
10731575 |
acaacttttgtaacaactttctcttttatactcatatt |
10731612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 48062086 - 48062123
Alignment:
| Q |
154 |
acaacttttgtaacaattttctcttttatactcatatt |
191 |
Q |
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| T |
48062086 |
acaacttttgtaacaactttctctcttatactcatatt |
48062123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 42853606 - 42853643
Alignment:
| Q |
154 |
acaacttttgtaacaattttctcttttatactcatatt |
191 |
Q |
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|||||||||||||||||||| ||| ||||||||||||| |
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| T |
42853606 |
acaacttttgtaacaattttatctcttatactcatatt |
42853643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 26501521 - 26501484
Alignment:
| Q |
154 |
acaacttttgtaacaattttctcttttatactcatatt |
191 |
Q |
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||||||||||| |||||||||||||| ||||||||||| |
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| T |
26501521 |
acaacttttgtgacaattttctctttcatactcatatt |
26501484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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