View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_16 (Length: 240)
Name: NF3029_low_16
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_16 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36578378 - 36578154
Alignment:
| Q |
1 |
tttcatcaagtatttttggtttgtatgttatgacgatttt-atctcacgtataaactgtttaaaatactaaaataattttttatccataaaaaattatgt |
99 |
Q |
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|||||| | |||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||| | |
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| T |
36578378 |
tttcattaggtatttttggtttgtatgttatgataatttttatctcacgtacaaactgtctaaaatattaaaatagatttttatccataaaaaattatat |
36578279 |
T |
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| Q |
100 |
aagattaaatactattcaatatcataaaagttatgtattg-ttttaccttttatagtgtgttgttatgttaaatatttactgtccagcagatcaaacata |
198 |
Q |
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| T |
36578278 |
aagattaaatattattcaatatcataaaagttatgtattgtttttacc--ttatactgtattgttatgttaaatatttaccgtctagcagatcaaacata |
36578181 |
T |
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| Q |
199 |
gcgaaagcacttttcaaaggtgtgttc |
225 |
Q |
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| T |
36578180 |
gcgaaagcacttttcaaaggtgtgttc |
36578154 |
T |
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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3694 - 3765
Alignment:
| Q |
60 |
taaaatactaaaataattttttatccataaaaaattatgtaagattaaatactattcaatatcataaaagtt |
131 |
Q |
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| T |
3694 |
taaaatacaaaaatagttttttatccaccaaaaatcatataagataaaaaattattcaatatcataaaagtt |
3765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 10531331 - 10531237
Alignment:
| Q |
37 |
ttttatctcacgtataaactgtttaaaatactaaaataattttttatccataaaaaattatgtaagattaaatactattcaatatcataaaagtt |
131 |
Q |
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| T |
10531331 |
ttttatctcacatacaaattgtttagaataccaaaataatcttttgtccataaaaaatcttataagataaaaaattattcaataccattaaagtt |
10531237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 3362525 - 3362598
Alignment:
| Q |
56 |
tgtttaaaatactaaaataattttttatccataaaaaattatgtaagattaaatactattcaatatcataaaag |
129 |
Q |
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||||||||||| ||||||||||||| |||||| ||| || || ||||||||| | ||||| |||||||||||| |
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| T |
3362525 |
tgtttaaaatattaaaataatttttaatccatcaaacatcatacaagattaaaaattattcgatatcataaaag |
3362598 |
T |
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