View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029_low_17 (Length: 234)

Name: NF3029_low_17
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029_low_17
NF3029_low_17
[»] chr6 (1 HSPs)
chr6 (36-215)||(30506440-30506616)
[»] chr8 (2 HSPs)
chr8 (154-191)||(10731575-10731612)
chr8 (156-217)||(24479267-24479328)
[»] chr7 (1 HSPs)
chr7 (154-191)||(48062086-48062123)
[»] chr4 (1 HSPs)
chr4 (154-191)||(42853606-42853643)
[»] chr1 (1 HSPs)
chr1 (154-191)||(26501484-26501521)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 30506440 - 30506616
Alignment:
Q  36 atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagaattgacaatcattttactcctccattaatt-aagaaaaatgata 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||    
T  30506440 atgaatggtataaaatatgccatcgattttgagctgacgaatatgtcacactaagagttgacgatcatttcactcctccattaattaaagaaaaatgata 30506539  T
Q  135 tttaaacaattannnnnnnacaacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttg 215  Q
    |||||| || ||       ||||||    | |||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  30506540 tttaaataactatttttttacaact----tgacaattttctcttttatacttatattttgtattcactctctattgttttg 30506616  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 10731575 - 10731612
Alignment:
Q  154 acaacttttgtaacaattttctcttttatactcatatt 191  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10731575 acaacttttgtaacaactttctcttttatactcatatt 10731612  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 24479267 - 24479328
Alignment:
Q  156 aacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttgtg 217  Q
    ||||||||| |||||||||| ||| ||||||| |||  || || ||||||||||||||||||    
T  24479267 aacttttgtgacaattttctttttcatactcacattacatttttactctctattgctttgtg 24479328  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 48062086 - 48062123
Alignment:
Q  154 acaacttttgtaacaattttctcttttatactcatatt 191  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  48062086 acaacttttgtaacaactttctctcttatactcatatt 48062123  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 42853606 - 42853643
Alignment:
Q  154 acaacttttgtaacaattttctcttttatactcatatt 191  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  42853606 acaacttttgtaacaattttatctcttatactcatatt 42853643  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 26501521 - 26501484
Alignment:
Q  154 acaacttttgtaacaattttctcttttatactcatatt 191  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  26501521 acaacttttgtgacaattttctctttcatactcatatt 26501484  T

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