View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_2 (Length: 675)
Name: NF3029_low_2
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 21 - 663
Target Start/End: Complemental strand, 5221015 - 5220373
Alignment:
| Q |
21 |
atagatattctcaatctacagatgattttgtattaannnnnnnatttaatttggatgatatgaaaggtagaaggtgcagcaaatgaagatggcaggaagc |
120 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5221015 |
atagatattctcaatctaaagatggttttgtattattatttttatttaatttggatgatatgaaaggtagaaggtgcagcaaatgaagatggcaggaagg |
5220916 |
T |
|
| Q |
121 |
caagcatatgggatacctttgcacatgctggcaatggtactctttcttatttatttgtctcaaatttttgtgaagatcaagtataaaatcatattgnnnn |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5220915 |
caagcatatgggatacctttgcacatgctggcaatggtactctttcttatttatttgtctcaaatttttgtgaagattaagtataaaatcatattgaaaa |
5220816 |
T |
|
| Q |
221 |
nnngtcatttatcttaaccagataaaactttcatgatgaagtttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgagggtcgatgtct |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5220815 |
aaagtcatttatcttaaccagataaaactttcatgatgaagtttgggtggagcctaactcaaccctacaaaaccggcttgtagagtgagggtcgatgtct |
5220716 |
T |
|
| Q |
321 |
tctacataaaattttaatttcaagcatgatgtcatcctatgtctgactcttaacgcaatataagttgatgctatttgattaattagttttctattacaat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5220715 |
tctacataaaattttaatttcaagcatgatgtcatcctatgtgtgactcttaacgcaatataagttgatgctatgtgattaattagttttctattacaat |
5220616 |
T |
|
| Q |
421 |
taatcatgttacaacattgaaattgttcatttaaattaaatttacaggagggctatacaagggaaatggtgacattgcatgtgatcaatatcacaaatat |
520 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5220615 |
taatcatcttacaacattgaaattgttcatttaaattaaatttacaggagggctatacaagggaaatggtgacattgcatgtgatcaatatcacaaatat |
5220516 |
T |
|
| Q |
521 |
aaggtcagtagatatgtatatcttttgatacactagaaacatcttatatattccttgacatatcaagagactgctattaagtttgtcatctttacctaaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5220515 |
aaggtcagtagatatgtatatcttttgatacactagaaacatcttatatattccttgacatatcaagagactgctattaagtttgtcatctttacctaaa |
5220416 |
T |
|
| Q |
621 |
attatgtttacatattctttcatttcttgtaggatgatgtcca |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5220415 |
attatgtttacatattctttcatttcttgtaggatgatgtcca |
5220373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 17912852 - 17912803
Alignment:
| Q |
262 |
tttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgaggg |
311 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
17912852 |
tttgggttgggcctaactcaaccctacaaaaccggcttgtagagtgaggg |
17912803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 49824656 - 49824620
Alignment:
| Q |
272 |
gcctaactcaaccctacaaaaccggtttgtagagtga |
308 |
Q |
| |
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|
| T |
49824656 |
gcctaactcaaccctacaaaaccggtttgtagagtga |
49824620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 25329981 - 25329903
Alignment:
| Q |
81 |
tgaaaggtagaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta |
159 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
25329981 |
tgaaagtttgaaggtgcagcaaatgaagatggcaggaaaccaagcatatgggatacctttgcccatggtggaaatggta |
25329903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 25323815 - 25323737
Alignment:
| Q |
81 |
tgaaaggtagaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta |
159 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||| ||||||| |
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|
| T |
25323815 |
tgaaaggttgagggtgcagcaaataaagatggcaggaagccaagcatttgggataccttctcccatgctggaaatggta |
25323737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 9988879 - 9988948
Alignment:
| Q |
90 |
gaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta |
159 |
Q |
| |
|
||||||||| |||||||||| || ||||| ||||||||||||||||||||||| | || ||| ||||||| |
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| T |
9988879 |
gaaggtgcatcaaatgaagacggtaggaaaccaagcatatgggatacctttgcccgtggtggaaatggta |
9988948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 14331912 - 14331981
Alignment:
| Q |
90 |
gaaggtgcagcaaatgaagatggcaggaagccaagcatatgggatacctttgcacatgctggcaatggta |
159 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
14331912 |
gaaggtgcagcaaatgaagatggtaggaaaccaagcatatgggatacctttgcccatggtggaaatggta |
14331981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 19609178 - 19609227
Alignment:
| Q |
262 |
tttgggtggagcctaactcaaccctacaaaaccggtttgtagagtgaggg |
311 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
19609178 |
tttgggttgagcctaactcaaccttacaaaaccggcttgtaaggtgaggg |
19609227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 8397074 - 8397042
Alignment:
| Q |
270 |
gagcctaactcaaccctacaaaaccggtttgta |
302 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
8397074 |
gagcctaactcaaccctacaaaaccggcttgta |
8397042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 7252282 - 7252250
Alignment:
| Q |
262 |
tttgggtggagcctaactcaaccctacaaaacc |
294 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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|
| T |
7252282 |
tttgggttgagcctaactcaaccctacaaaacc |
7252250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 33456072 - 33456032
Alignment:
| Q |
262 |
tttgggtggagcctaactcaaccctacaaaaccggtttgta |
302 |
Q |
| |
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||||||| | ||||||||||||| ||||||||||||||||| |
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|
| T |
33456072 |
tttgggttgggcctaactcaaccttacaaaaccggtttgta |
33456032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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