View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3029_low_21 (Length: 215)
Name: NF3029_low_21
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 17763025 - 17763200
Alignment:
| Q |
14 |
caaaggggtgtagaatagtgcaagaacgcactacgatctaggttagtgttgaataagggggataaaccttatgttgcacgtgaccaatgtactaagatag |
113 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17763025 |
caaagtggtgtagaatagtgcaagaatgcactacgatctaggttagcgttgaataagggggataaaccctatgttgcacgtgaccaatgtactaagatag |
17763124 |
T |
|
| Q |
114 |
gaaagatttggaagacactgtctggctggaaaatggtacctctcgacaaaggatactatgattctccctatgattc |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17763125 |
gaaagatttggaagacactgtctggatggaaaatggtacctctcgacaaaggatactatgattctccctttgattc |
17763200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 17458463 - 17458569
Alignment:
| Q |
68 |
aagggggataaaccttatgttgcacgtgaccaatgtactaagataggaaagatttggaagacactgtctggctggaaaatggtacctctcgacaaaggat |
167 |
Q |
| |
|
||||||||||| || ||| |||||| |||| | |||| || ||||||||| ||||| | ||| || | |||||||||||||| ||||||| |||||| | |
|
|
| T |
17458463 |
aagggggataagccgtattctgcacgagacctaagtaccaaaataggaaagctttgggaaacattggcgggctggaaaatggtgcctctcggcaaaggtt |
17458562 |
T |
|
| Q |
168 |
actatga |
174 |
Q |
| |
|
||||||| |
|
|
| T |
17458563 |
actatga |
17458569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 13311381 - 13311320
Alignment:
| Q |
113 |
ggaaagatttggaagacactgtctggctggaaaatggtacctctcgacaaaggatactatga |
174 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
13311381 |
ggaaagatttggaaaacatcgtctggttggaaaatggtgcctctcggcaaaggttactatga |
13311320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 8668898 - 8668859
Alignment:
| Q |
137 |
ggctggaaaatggtacctctcgacaaaggatactatgatt |
176 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8668898 |
ggctggaaaatggtgcctctcggcaaaggatactatgatt |
8668859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 5114794 - 5114855
Alignment:
| Q |
113 |
ggaaagatttggaagacactgtctggctggaaaatggtacctctcgacaaaggatactatga |
174 |
Q |
| |
|
|||||| ||||||| ||| || |||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
5114794 |
ggaaagctttggaaaacattggctggttggaaaatggtgcctctcggcaaaggttactatga |
5114855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University