View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029_low_3 (Length: 665)

Name: NF3029_low_3
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029_low_3
NF3029_low_3
[»] chr5 (1 HSPs)
chr5 (42-665)||(26575325-26575951)


Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 42 - 665
Target Start/End: Complemental strand, 26575951 - 26575325
Alignment:
Q  42 cgcacgtcgaaatgaaagcttaaagttgtagcttttgcagtgacttgtcttgggacgcggtatcacagtaaatacataacctgagattcttaaagttgga 141  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26575951 cgcacgtcgaaatgaaagcttacagttgtagcttttgcagtgacttgtcttgggacgcggtatcacagtaaatacataacctgagattcttaaagttgga 26575852  T
Q  142 ctaagtggtaaatacgtacgtcgaaatgaattaata---taatcacatcattattcacataatgttcatagtactcatgaaatccagatgatcatatcaa 238  Q
    ||||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  26575851 ctaagtggtaaatacgtacgtcgaaatgaattaataatatagtcacataattattcacataatgttcatagcactcatgaaacccagatgatcatatcaa 26575752  T
Q  239 gtttcacacacaaaagttgaagacaatgaataactcatcagttcaacacttaacaaaccaagagacattattcatcgcataacacaaagtttcatctaat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  26575751 gtttcacacacaaaagttgaagacaatgaataactcatcagttcaacacttaacaaaccaagagacattattcatcgcataacgcaaagtttcatcttat 26575652  T
Q  339 tgtataaacaaatgaaacattgtaagttaccaaaataaatagttttctaatgagttgttactttaagagcaactaccctcttatttataaacaaatgaaa 438  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26575651 tgtataaacaaattaaacattgtaagttaccaaaataaatagttttctaatgagttgttactttaagagcaactaccctcttatttataaacaaatgaaa 26575552  T
Q  439 cattgtaaaataccaaaataaacagtttttaatgagttgtttcttttacgaccaactgttaacctgaatttcacctccttctccggttcctgctatttgg 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  26575551 cattgtaaaataccaaaataaacagtttttaatgagttgtttctttaacgaccaactgttaacctgaatttcacctccttctccggatcctgctattcgg 26575452  T
Q  539 tgcaacacttgcaccgcttctatgccatctgatggaacttgaacctccgtggcttaccgatcttcttacatagctccgaatcttcatgtgccctagtgca 638  Q
    |||||||||||||| ||||||||| | |||| |||||||||||||||| ||||||||||||||| |||||||||||||  ||||  ||| ||| ||||||    
T  26575451 tgcaacacttgcactgcttctatgacctctgctggaacttgaacctccttggcttaccgatctttttacatagctccgcttcttgctgttcccaagtgca 26575352  T
Q  639 gcttttgcaacactatctgtcaatatt 665  Q
    ||||||||||||||||| |||||||||    
T  26575351 gcttttgcaacactatcggtcaatatt 26575325  T

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