View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3029_low_5 (Length: 545)
Name: NF3029_low_5
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 40624074 - 40623559
Alignment:
| Q |
14 |
atatgtgttgactgtaatttgcattttgttaactgaattaacccgttaacaagtgttttaataatcttgttaaggattgtgcttttacctcttcttatga |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624074 |
atatatgttgactgtaatttgcattttgttaactgaattaacccgttaacaagtgttttaataatcttgttaaggattgtgcttttacctcttcttatga |
40623975 |
T |
|
| Q |
114 |
aggctaaattaagattctaaaaataataaaaagcaattagctagaatacttatgaagttagcatgaataataggaatacatgcacataatttagaagttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623974 |
aggctaaattaagattctaaaaataataaaaagcaattagctagaatacttatgaagttagcatgaataataggaatacatgcacataatttagaagttt |
40623875 |
T |
|
| Q |
214 |
aataggtacaataaacaaatgcattaattaagaggnnnnnnnnctcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctg |
313 |
Q |
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| T |
40623874 |
actaggtacaataaacaaatgcattaattaagaggaaaaaaaactcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctg |
40623775 |
T |
|
| Q |
314 |
ctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623774 |
ctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctac |
40623675 |
T |
|
| Q |
414 |
agttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatga |
513 |
Q |
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| T |
40623674 |
agttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatga |
40623575 |
T |
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| Q |
514 |
tgatgaagatgtcatt |
529 |
Q |
| |
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|||||||||||||||| |
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| T |
40623574 |
tgatgaagatgtcatt |
40623559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 327 - 525
Target Start/End: Complemental strand, 27512125 - 27511927
Alignment:
| Q |
327 |
agaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtctctacagttactaagatc |
426 |
Q |
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|||||||||||||||||||||||| ||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
27512125 |
agaacctttgcttatgtccaccaagtgtcacctgtgaagtctttgaatgaagtttgcagaccttatggcgcatatgatatcctctatagttactaagatc |
27512026 |
T |
|
| Q |
427 |
agcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatgatgatgaagatgt |
525 |
Q |
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| T |
27512025 |
agcttgacaaccatccgcaagacttgaaactatctgagttccattgttaatagctctagctttcttagatgaccctgaagttgaagatgatgaagatgt |
27511927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 27270398 - 27270434
Alignment:
| Q |
493 |
agatgaccctgaagttgatgatgatgaagatgtcatt |
529 |
Q |
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| T |
27270398 |
agatgaccctgaagttgaagatgatgaagatttcatt |
27270434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 45410729 - 45410581
Alignment:
| Q |
309 |
acctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagtc |
408 |
Q |
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|||||||||| || |||||||||||||| ||| | |||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
45410729 |
acctgctacactgttggcagaacctttgtttaaggccacaaattgtaacctctggagtcttggaatgaagttcacaaaccttatgacgcctatgataatc |
45410630 |
T |
|
| Q |
409 |
tctacagttactaagatcagcttgacaaccatccacaagacatgaaact |
457 |
Q |
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|||||| ||||||||||||| | || |||||||||||||| |||||| |
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| T |
45410629 |
tctacaattactaagatcagaattgcacccatccacaagacaagaaact |
45410581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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