View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3029_low_7 (Length: 415)
Name: NF3029_low_7
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 75 - 397
Target Start/End: Complemental strand, 31834886 - 31834563
Alignment:
| Q |
75 |
tatgggtatgtatagttttggtagggtgtttcataaatgcagaggaaaatcttctctgattttagatatctcttttaaatgcaaagaattataaattaat |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31834886 |
tatgggtatgtatagttttggtagggtgtttcataaatgcagaggaaaatcttctctgattttagatatctcttttaaatgcaaagaattataaattaat |
31834787 |
T |
|
| Q |
175 |
ggaagtatatgtacttgaagcnnnnnnngtatagcaagaattttcaacggaagtatatgacgcagaaaatgtcataaaccatgtgctaactttgctctgt |
274 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31834786 |
ggaagtatatgtacttgaagctaaaaaagtatagcaagaattttcaacggaagtatatgacgcagaaaatgtcataaaccatgtgctaactttgctctgt |
31834687 |
T |
|
| Q |
275 |
ggcattaatatctctgctgtgaaatttgatgatatagtcgttgacagtaacaagacattccaatacatagaagagaccggcaatggcaa-acagtggttg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
31834686 |
ggcattaatatctctgctgtgaaatttgatgatatagtcgttgacagtaacaagacattccaatacatagaagagaccggtaatggcaacacagtggttg |
31834587 |
T |
|
| Q |
374 |
gggctattgtgtttaatagccgcg |
397 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31834586 |
gggctattgtgtttaatagccgcg |
31834563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 31834954 - 31834924
Alignment:
| Q |
9 |
gattatactagtaactactggtgctacgtag |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31834954 |
gattatactagtaactactggtgctacgtag |
31834924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University