View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3029_low_8 (Length: 411)

Name: NF3029_low_8
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3029_low_8
NF3029_low_8
[»] chr1 (3 HSPs)
chr1 (218-398)||(2626221-2626401)
chr1 (214-360)||(2626002-2626148)
chr1 (19-95)||(2625834-2625910)
[»] chr4 (1 HSPs)
chr4 (227-348)||(33661127-33661257)
[»] chr7 (3 HSPs)
chr7 (298-360)||(22367106-22367168)
chr7 (359-398)||(17352490-17352529)
chr7 (232-270)||(22367088-22367126)
[»] chr3 (2 HSPs)
chr3 (351-398)||(51242176-51242223)
chr3 (357-397)||(51242249-51242289)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 218 - 398
Target Start/End: Original strand, 2626221 - 2626401
Alignment:
Q  218 caaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggacaatg 317  Q
    |||||| |||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2626221 caaggatcaattcaagaaaatattgaagtcacggaccatgatttgaacaatagcatagatatgaatttgggagacaacatagaccatgagttggacaatg 2626320  T
Q  318 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcactatttcttcttct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2626321 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcattatttcttcttct 2626401  T

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Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 2626002 - 2626148
Alignment:
Q  214 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2626002 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgggagacaacatagaccatgagttggac 2626101  T
Q  314 aatggtaagttatttttctttaactcattcattaataattttttctt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2626102 aatggtaagttatttttctttaactcattcattaataattttttctt 2626148  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 2625834 - 2625910
Alignment:
Q  19 gatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttgaaacgatttattttatgtgtacag 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2625834 gatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttgaaacgatttattttatgtgtacag 2625910  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 33661257 - 33661127
Alignment:
Q  227 attcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaa---------catagaccatgagttggacaatg 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||         || | || |||| ||||||||||    
T  33661257 attcaagaaaatactgaagtcacataccatgatttggacaatggtatagatatgaatttggaagacaatttagaagtcacaaacaatgatttggacaatg 33661158  T
Q  318 gtaagttatttttctttaactcattcattaa 348  Q
    |||||||||||||||||| ||||||||||||    
T  33661157 gtaagttatttttctttagctcattcattaa 33661127  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 22367106 - 22367168
Alignment:
Q  298 agaccatgagttggacaatggtaagttatttttctttaactcattcattaataattttttctt 360  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  22367106 agaccatgatttggacaatggtaagttgtttttatttaactcattcattaagaattttttctt 22367168  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 17352490 - 17352529
Alignment:
Q  359 ttcattgttgttcaaagagtctttcactatttcttcttct 398  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  17352490 ttcattgttgtccaaagagtcttccactatttcttcttct 17352529  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 22367088 - 22367126
Alignment:
Q  232 agaaaatattgaagtcacataccatgatttggacaatgg 270  Q
    |||||||||||||||| || |||||||||||||||||||    
T  22367088 agaaaatattgaagtcccagaccatgatttggacaatgg 22367126  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 51242223 - 51242176
Alignment:
Q  351 attttttcttcattgttgttcaaagagtctttcactatttcttcttct 398  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  51242223 atttcttcttcattgttgttcaaagagtctttcactatttcttcttct 51242176  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 51242289 - 51242249
Alignment:
Q  357 tcttcattgttgttcaaagagtctttcactatttcttcttc 397  Q
    |||||| |||||||||| ||||||| |||||||||||||||    
T  51242289 tcttcaatgttgttcaaggagtcttccactatttcttcttc 51242249  T

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