View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3029_low_9 (Length: 358)
Name: NF3029_low_9
Description: NF3029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3029_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 26575235 - 26574876
Alignment:
| Q |
1 |
atcaccgatgtttctctgaatagcatttccgagtagattaagtgcctggagtgagttgtagttagccactagctggcctaatgcttttgttgtcgtgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26575235 |
atcaccgatgtttctctgaatagcatttccgagtagattaagtgcctggagtgagttgtagttagccactagctggcctaatgcttttgttgtcgtgatt |
26575136 |
T |
|
| Q |
101 |
ttgttgaagctcaagtccagaactgttagcttaaacaacctatgaagcccctcaacatcacttatcttgttctcagcaagatatagctctttgacaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26575135 |
ttgttgaagctcaagtccagaactgttagcttaaacaacctatgaagcccctcaacatcacttatcttgttgtcagcaagatatagctctttgacaattg |
26575036 |
T |
|
| Q |
201 |
tacaacttgacaaacctgacaaatcacatagtgaataattgtaatgctcat---nnnnnnntaaagacaaa-------------caaatttctttatttt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
26575035 |
tacaacttgacaaacctgacaaatcacatagtgaataattgtaatgctcataaaaaaaaaataaagacaaacaaatttcatatgcaaatttctttatttt |
26574936 |
T |
|
| Q |
285 |
ttctgtcttaaccctccggttta----taggtgaaggggactctgatactacggagttcg |
340 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26574935 |
ttctgtcttaaccctccggtttataggtaggtgaaggggactctgatactacggagttcg |
26574876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33765792 - 33765583
Alignment:
| Q |
1 |
atcaccgatgtttctctgaatagcatttccgagtagattaagtgcctggagtgagttgtagttagccactagctggcctaatgcttttgttgtcgtgatt |
100 |
Q |
| |
|
||||| |||||| || ||||| | ||||||||| ||||| | ||| | | ||||||||||||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
33765792 |
atcactgatgttgctttgaattggatttccgagcagattcaaggccagaactgagttgtagttagctacaagctggcgcagtgcttttgttgtcgtgatc |
33765693 |
T |
|
| Q |
101 |
ttgttgaagctcaagtccagaactgttagcttaaacaacctatgaagcccctcaacatcacttatcttgttctcagcaagatatagctctttgacaattg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| || || ||||||||||||||||||||||| | |||||||||||||||||||| | || |
|
|
| T |
33765692 |
ttgttaaagctcaagtccagaactgttagcttgaataacctgtgtaggccctcaacatcacttatcttgtttcccgcaagatatagctctttgaccagtg |
33765593 |
T |
|
| Q |
201 |
tacaacttga |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
33765592 |
tacaacttga |
33765583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University