View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3030_high_13 (Length: 443)

Name: NF3030_high_13
Description: NF3030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3030_high_13
NF3030_high_13
[»] chr2 (1 HSPs)
chr2 (1-443)||(13387503-13387945)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 13387503 - 13387945
Alignment:
Q  1 aattttttgcaatcgaatgctcatcattgctatattcctatttatatatgtcgtcatgtgtgagtttcggcactaaactcttttaaagaagnnnnnnntg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||       ||    
T  13387503 aattttttgcaatcgaatgctcatcattgctatattcctatttatatatatcgtcacgtgtgagtttcggcactagactcttttaaagaagaaaaaaatg 13387602  T
Q  101 acttatctaaaacttctataattatatacataaattagatgttaattgttaattactagctatatcatacacaacattttggatgtcttattacaatatc 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13387603 acttatctgaaacttctataattatatacataaattagatgttaattgttaattactagctatatcgtacacaacattttggatgtcttattacaatatc 13387702  T
Q  201 atagaattatacattttaggcatttgcatacctacctatgactcattctgcagaatcttgatctcccaaagaaactttacttagtctacttggcaacaat 300  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13387703 atagaattatacattttaggcattgccatacctacctatgactcattctgcagaatcttgatctcccaaagaaactttacttagtctacttggcaacaat 13387802  T
Q  301 ttaacattgttaaaattacttacaatttttcttttcccatttctgctttgatgagatctcaatatagctctccttgctagctcttttcccacattggatt 400  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13387803 ttaacattgttaaagttacttacaatttttcttttcccatttctgcgttgatgagatctcaatatagctctccttgctagctcttttcccacattggatt 13387902  T
Q  401 tagttgttacatttgtggcagaaatttcttcagatgtaagtcc 443  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  13387903 tagttgttacatttgtggcagaaatttcttcagaagtaagtcc 13387945  T

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